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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:48:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

SS1495.txt NaCl treated Chinese cabbage seedling library Brassica rapa subsp. pekinensis cDNA clone SS1495.txt 5', mRNA sequence.
CV545530.1:106-125
GGCCGTCGCTATGCCTTTCATGCCGTTCCC106TGAACAGCAGATGGAGTTGGCAGGGATCATGTTGGGTAAAGGCTACTGCA
Brassica rapa subsp. pekinensis mRNA, clone: BRest06-P17, 5'-end sequence.
DC845550.1:46-65
GGCCGTCGCTATGCCTTTCATGCCGTTCCC46TGAACAGCAGATGGAGTTGGCAGGGATCATGTTGGGTAAAGGCTACTGCA
BR002028 light-chilled whole plant cDNA library KBCD Brassica rapa subsp. pekinensis cDNA clone KBCD-003E01 5', mRNA sequence.
EX017384.1:44-63
GGCCGTCGCTATGCCTTTCATGCCGTTCCC44TGAACAGCAGATGGAGTTGGCAGGGATCATGTTGGGTAAAGGCTACTGCA
BR007382 light-chilled whole plant cDNA library KBCD Brassica rapa subsp. pekinensis cDNA clone KBCD-081E12 5', mRNA sequence.
EX022738.1:386-405
GGCCGTCGCTATGCCTTTCATGCCGTTCCC386TGAACAGCAGATGGAGTTGGCAGGGATCATGTTGGGTAAAGGCTACTGCA
BR041217 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-019E09 5', mRNA sequence.
EX056573.1:380-399
GGCCGTCGCTATGCCTTTCATGCCGTTCCC380TGAACAGCAGATGGAGTTGGCAGGGATCATGTTGGGTAAA
Brassica rapa subsp. pekinensis mRNA, clone:BBRAF03L22, 5'-end sequence.
FY064691.1:476-495
GGCCGTCGCTATGCCTTTCATGCCGTTCCC476TGAACAGCAGATGGAGTTGGCAGGGATCATGTTGGGTAAAGGCTACTGCA
Brassica rapa subsp. pekinensis mRNA, clone:BBRAF05N18, 5'-end sequence.
FY065443.1:241-260
GGCCGTCGCTATGCCTTTCATGCCGTTCCC241TGAACAGCAGATGGAGTTGGCAGGGATCATGTTGGGTAAAGGCTACTGCA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_1938.
FX698438.1:469-488
GGCCGTCGCTATGCCTTTCATGCCGTTCCC469TGAACAGCAGATGGAGTTGGCAGGGATCATGTTGGGTAAAGGCTACTGCA
Melanchra persicariae genome assembly, chromosome: 11.
OX376654.1:4185399-4185418
GGAACCGGATCAGGTTTTAGAATCATTTGA4185399TGAACAGCAGATGGAGTTGGAAAGTTCGTATAGTGATGATGATGAAGATG
Melanchra persicariae genome assembly, chromosome: 30.
OX376673.1:6128697-6128716
GGAACCGGATCAGGTTTTAGAATCGTTTGA6128697TGAACAGCAGATGGAGTTGGAAAGTTCGTATAGTGATGATGATGAAGAGC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_11357.
FX731922.1:1393-1412
TGCAGTAGCCTTTACCCAACATGATCCCTG1393CCAACTCCATCTGCTGTTCAGGGAACGGCATGAAAGGCATAGCGACGGCC
KBrS001P16R KBrS, Brassica rapa Sau3AI BAC library Brassica rapa subsp. pekinensis genomic clone KBrS001P16, genomic survey sequence.
DU827629.1:845-864
TGCAGTAGCCTTTACCCAACATGATCCCTG845CCAACTCCATCTGCTGTTCAGGGAACGGCATGA
Brassica rapa genome, scaffold: A01.
LR031571.1:8905280-8905299
TGCAGTAGCCTTTACCCAACATGATCCCTG8905280CCAACTCCATCTGCTGTTCAGGGAACGGCATGAAAGGCATAGCGACGGCC
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:8929345-8929364
TGCAGTAGCCTTTACCCAACATGATCCCTG8929345CCAACTCCATCTGCTGTTCAGGGAACGGCATGAAAGGCATAGCGACGGCC
Melanchra persicariae genome assembly, chromosome: 11.
OX376654.1:8363993-8364012
GCTCTTCATCATCATCACTATACGAACTTT8363993CCAACTCCATCTGCTGTTCATCAAACGATTCTAAAACCTGATCCGGTTCC
Melanchra persicariae genome assembly, chromosome: 17.
OX376660.1:7924234-7924253
GCTCTTCATCATCATCACTATACGAACTTT7924234CCAACTCCATCTGCTGTTCATCAAACGATTTTAAAACCTGATCCGGTTCC
Stenodema calcarata genome assembly, chromosome: 10.
OY986057.1:22397052-22397071
AGGAAAGGCAGATAGTTGGCAATAACCGTT22397052CCAACTCCATCTGCTGTTCAACTCATGAACTACACGAATATTTACTCAAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGAACAGCAGATGGAGTTGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAACAGCAGATGGAGTTGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.953 | 0.945 | search_plus_done; http://172.18.8.135:50400/match?q=TGAACAGCAGATGGAGTTGG&k=0&no_gap=0&offset=0&limit=50
1.094 | 0.140 | search_minus_done; http://172.18.8.135:50400/match?q=CCAACTCCATCTGCTGTTCA&k=0&no_gap=0&offset=0&limit=40
1.099 | 0.005 | cgi_end;

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