GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 08:43:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Pyrus x bretschneideri Unigene18433_XinShao mRNA sequence.
JR613127.1:59-78
CCCCCAAAAAACACCTTCCAAAGCTCTCCG59TGAACCAGTAACCCTTTGACTCCCTGTCTGCCCTTGTCCTTCTCCACCTC
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:4526320-4526339
TCCAAAAACACCTTCTTCCAAAGCTCTCCG4526320TGAACCAGTAACCCTTTGACTCTCTGTCTGCCCTTTTCCTTCTCCATCTC
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:4236290-4236309
TCCAAAAACACCTTCTTCCAAAGCTCTCCG4236290TGAACCAGTAACCCTTTGACTCTCTGTCTGCCCTTTTCCTTCTCCATCTT
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:4660102-4660121
TCCAAAAACACCTTCTTCCAAAGCTCTCCG4660102TGAACCAGTAACCCTTTGACTCTCTGTCTGCCCTTTTCCTTCTCCATCTT
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:4410278-4410297
TCCAAAAACACCTTCTTCCAAAGCTCTCCG4410278TGAACCAGTAACCCTTTGACTCTCTGTCTGCCCTTTTCCTTCTCCATCTT
Crataegus laevigata genome assembly, chromosome: 13.
OY756950.1:12478664-12478683
ATCTCCTTCACCTTCTTCCAAAGCTCTCCG12478664TGAACCAGTAACCCTTTGACTCTCTGTCTACCCTTTTCCTTCTCCACCTC
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:3674996-3675015
TCCAAAAATACCTTCTTCCAAAGCTCTCCG3674996TGAACCAGTAACCCTTTGACTCTTTGTCTGCCCTTTTCCTTCTCCATCTC
Bibio marci genome assembly, chromosome: 4.
OU343117.1:6040186-6040205
CATGGCACAAAATCTATTTGCCGTATCTGC6040186TGAACCAGTAACCCTTTGACTAATAGTTCATAATACACATCTCCCAAATG
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:42031368-42031387
GAGATGGAGAAGGAAAAGGGCAGACAGAGA42031368GTCAAAGGGTTACTGGTTCACGGAGAGCTTTGGAAGAAGGTGTTTTTGGA
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:38764225-38764244
GAGATGGAGAAGAAAAAGGGCAGACAGAGA38764225GTCAAAGGGTTACTGGTTCACGGAGAGCTTTGGAAGAAGGTGTTTTTGGA
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:42372608-42372627
AAGATGGAGAAGGAAAAGGGCAGACAGAGA42372608GTCAAAGGGTTACTGGTTCACGGAGAGCTTTGGAAGAAGGTGTTTTTGGA
Malus domestica genome assembly, chromosome: 5.
OU696681.1:41773611-41773630
GAGATGGAGAAGGAAAAGGGCAGACAGAGA41773611GTCAAAGGGTTACTGGTTCACGGAGAGCTTTGGAAGAAGGTGTTTTTGGA
Malus domestica genome assembly, chromosome: 5.
OU744546.1:41206712-41206731
GAGATGGAGAAGGAAAAGGGCAGACAGAGA41206712GTCAAAGGGTTACTGGTTCACGGAGAGCTTTGGAAGAAGGTGTTTTTGGA
Malus domestica genome assembly, chromosome: 5.
OU744957.1:41761855-41761874
AAGATGGAGAAGGAAAAGGGCAGACAGAGA41761855GTCAAAGGGTTACTGGTTCACGGAGAGCTTTGGAAGAAGGTGTTTTTGGA
Malus domestica genome assembly, chromosome: 5.
OU744995.1:42648577-42648596
GAGATGGAGAAGGAAAAGGGCAGACAGAGA42648577GTCAAAGGGTTACTGGTTCACGGAGAGCTTTGGAAGAAGGTGTTTTTGGA
Crataegus laevigata genome assembly, chromosome: 6.
OY756943.1:33045630-33045649
GAGGTGGAGAAGGAAAAGGGTAGACAGAGA33045630GTCAAAGGGTTACTGGTTCACGGAGAGCTTTGGAAGAAGGTGAAGGAGAT
Crataegus laevigata genome assembly, chromosome: 9.
OY756946.1:11143761-11143780
GAGGTGGAGAAGGAAAAGGGTAGACAGAGA11143761GTCAAAGGGTTACTGGTTCACGGAGAGCTTTGGAAGAAGGTGAAGGAGAT
Pyrus communis genome assembly, chromosome: 3.
OY757070.1:26925561-26925580
GAGGTGGAGAAGGACAAGGGCAGACAGGGA26925561GTCAAAGGGTTACTGGTTCACGGAGAGCTTTGGAAGGTGTTTTTTGGGGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGAACCAGTAACCCTTTGAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAACCAGTAACCCTTTGAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.140 | 0.131 | search_plus_done; http://172.18.8.135:50400/match?q=TGAACCAGTAACCCTTTGAC&k=0&no_gap=0&offset=0&limit=50
0.172 | 0.033 | search_minus_done; http://172.18.8.135:50400/match?q=GTCAAAGGGTTACTGGTTCA&k=0&no_gap=0&offset=0&limit=42
0.179 | 0.007 | cgi_end;

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