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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 16:15:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Pyrus x bretschneideri Unigene12516_XinShao mRNA sequence.
JR607516.1:870-893
TTGTACTCGTATAATCCATCTTCTTTCCTG870TGAAGAAACTGGCTATATGAAGGAATAAATTTTTGTCATGATCATCTTGTAAAG
TSA: Pyrus x bretschneideri Unigene12517_XinShao mRNA sequence.
JR607517.1:873-896
TTGTACTCGTATAATCCATCTTCTTTCCTG873TGAAGAAACTGGCTATATGAAGGAATAAATTTTTGTCATGATCATCTTGTAAAG
Malus hybrid cultivar cultivar Flame chromosome 17.
CP141926.1:785718-785741
TTGTAATTGTATAATCCATCGTATTTCCTT785718TGAAGAAACTGGCTATATGAAGGAATAAATTTTTGTCATGATCATCTTGTAAAG
Malus hybrid cultivar cultivar Flame chromosome 17.
CP141926.1:796020-796043
TAGTACTTGTATAATCCATTGACTTTCCTG796020TGAAGAAACTGGCTATATGAAGGAATAAATTTTTGTCATGATCATCTTGTAAAG
Malus hybrid cultivar cultivar Flame chromosome 17.
CP141926.1:814693-814716
TTCTACTTGTATAATCCATCCTCTTTCCTG814693TGAAGAAACTGGCTATATGAAGGAATAAATTTTTGTCATGATCATCTTGTAAAG
Malus hybrid cultivar cultivar Flame chromosome 17.
CP141926.1:973633-973656
TTGTACTTGTATAATCCATTGACTTTCCTG973633TGAAGAAACTGGCTATATGAAGGAATAAATTTTTGTCATGATCATCTTGTAAAG
Malus hybrid cultivar cultivar Flame chromosome 17.
CP141943.1:965463-965486
TTGTACTTGTATAATCCATCGTCTTTCCTG965463TGAAGAAACTGGCTATATGAAGGAATAAATTTTTGTCATGATCATCTTGTAAAG
Malus x robusta genome assembly, chromosome: 11.
OY720335.1:971466-971489
TTGTACTTGTATAATCCATCGTCTCTCCTG971466TGAAGAAACTGGCTATATGAAGGAATAAATTTTTGTCATGATCATCTTGTAAAG
Pyrus communis genome assembly, chromosome: 11.
OY757078.1:798696-798719
TTGTAATTGTATAATCCATCGTCTTTCCTG798696TGAAGAAACTGGCTATATGAAGGAATAAATTTTTGTCATGATCATCTTGTAAAG
Malus hybrid cultivar cultivar Royalty chromosome 17.
CP141969.1:32875336-32875359
CTTTACAAGATGATCATGACAAAAATTTAT32875336TCCTTCATATAGCCAGTTTCTTCACAGGAAAGTCAATGGATTATACAAGTACAA
Malus hybrid cultivar cultivar Royalty chromosome 17.
CP141969.1:33034266-33034289
CTTTACAAGATGATCATGACAAAAATTTAT33034266TCCTTCATATAGCCAGTTTCTTCACAGGAAAGAGGATGGATTATACAAGTAGAA
Malus hybrid cultivar cultivar Royalty chromosome 17.
CP141969.1:33052941-33052964
CTTTACAAGATGATCATGACAAAAATTTAT33052941TCCTTCATATAGCCAGTTTCTTCACAGGAAAGTCAATGGATTATACAAGTACTA
Malus hybrid cultivar cultivar Royalty chromosome 17.
CP141969.1:33063243-33063266
CTTTACAAGATGATCATGACAAAAATTTAT33063243TCCTTCATATAGCCAGTTTCTTCAAAGGAAATACGATGGATTATACAATTACAA
Malus hybrid cultivar cultivar Royalty chromosome 17.
CP141986.1:33838121-33838144
CTTTACAAGACGATCATGACCAAAATTTAT33838121TCCTTCATATAGCCAGTTTCTTCACAGGAAAGACGATGGATTATACAATTACAA
Malus hybrid cultivar cultivar SH6 chromosome 17.
CP143374.1:33354793-33354816
CTTTACAAGATGATCATGACAAAAATTTAT33354793TCCTTCATATAGCCAGTTTCTTCACAGGAAAGACAATGGATTATACAAGTACAA
Malus hybrid cultivar cultivar SH6 chromosome 17.
CP143391.1:30691428-30691451
CTTTACAAGATGATCATGACAAAAAATTAT30691428TCCTTCATATAGCCAGTTTCTTCACAGGAAAGTCAATGGATTATACAAGTACAA
Malus domestica genome assembly, chromosome: 17.
OU696693.1:33202252-33202275
CTTTACAAGATGATCATGACAAAAATTTAT33202252TCCTTCATATAGCCAGTTTCTTCACAGGAGAGACGATGGATTATACAAGTACAA
Malus domestica genome assembly, chromosome: 17.
OU696693.1:33297700-33297723
CTTTACAAGATGATCATGACAAAAATTTAT33297700TCCTTCATATAGCCAGTTTCTTCACAGGAAAGACAATGGATTATACAAGTACAA
Malus domestica genome assembly, chromosome: 17.
OU744558.1:33819247-33819270
CTTTACAAGATGATCATGACAAAAATTTAT33819247TCCTTCATATAGCCAGTTTCTTCACAGGAAAGTCAATGGATTATACAAGTGCAA
Malus domestica genome assembly, chromosome: 17.
OU744558.1:33868653-33868676
CTTTACAGGATGATCATGACAAAAATTTAT33868653TCCTTCATATAGCCAGTTTCTTCACAGGAAAGACGATGGATTATACAAGTACAA
Malus domestica genome assembly, chromosome: 17.
OU744558.1:33919299-33919322
CTTTACAAGATGATCATGACAAAAATTTAT33919299TCCTTCATATAGCCAGTTTCTTCACAGGAAAGACAATGGATTATACAAGTACAA
Malus domestica genome assembly, chromosome: 17.
OU744969.1:32897113-32897136
CTTTACAAGATGATCATGACAAAAATTTAT32897113TCCTTCATATAGCCAGTTTCTTCACAGGAAAGACGATGGATTATACAAGTACAA
Malus domestica genome assembly, chromosome: 17.
OU745007.1:33100845-33100868
CTTTACAAGATGATCATGACAAAAATTTAT33100845TCCTTCATATAGCCAGTTTCTTCACAGGAAAGACAATGGATTATACAAGTACAA
Crataegus laevigata genome assembly, chromosome: 8.
OY756945.1:38547665-38547688
CTTTACAAGATGATCATGACAAAAATTTAT38547665TCCTTCATATAGCCAGTTTCTTCATAGGAAAGACGATGAATTATATAAGTACAA
Crataegus laevigata genome assembly, chromosome: 8.
OY756945.1:38634098-38634121
CTTTGCCAGATGATCGTGACCAAAATCTAT38634098TCCTTCATATAGCCAGTTTCTTCATAGGAAAGACGATGGATTATACAATTACAA
Crataegus laevigata genome assembly, chromosome: 8.
OY756945.1:38736158-38736181
CTTTACCGGATGATCATGACAAAAATTTAT38736158TCCTTCATATAGCCAGTTTCTTCATAGGAAAGACAACGGATTATACAATTCCAA
Crataegus laevigata genome assembly, chromosome: 8.
OY756945.1:38767568-38767591
CTTTACCAGATGATCATGACCAAAATTTAT38767568TCCTTCATATAGCCAGTTTCTTCACAGGAAGGACGATGGATTATACAATTACAA
Crataegus laevigata genome assembly, chromosome: 8.
OY756945.1:38783796-38783819
CTTTGCCAGATGATCGTGACCAAAATTTAT38783796TCCTTCATATAGCCAGTTTCTTCATAGGAAAGACGATGGATTATACAATTACAA
Crataegus laevigata genome assembly, chromosome: 12.
OY756949.1:10533175-10533198
CTTTACAAGATGATCATGACCAAAATTTAT10533175TCCTTCATATAGCCAGTTTCTTCACAGGGAGGACGATGGATTATACAATTACAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGAAGAAACTGGCTATATGAAGGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAAGAAACTGGCTATATGAAGGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.133 | 0.124 | search_plus_done; http://172.18.8.135:50400/match?q=TGAAGAAACTGGCTATATGAAGGA&k=0&no_gap=0&offset=0&limit=50
0.165 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=TCCTTCATATAGCCAGTTTCTTCA&k=0&no_gap=0&offset=0&limit=41
0.179 | 0.014 | cgi_end;

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