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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 19:23:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

9RDBNGA_UP_005_A10_25SEP2003_080 Brassica napus 9RDBNGA Brassica napus cDNA 5', mRNA sequence.
ES950166.1:33-57
CGTAATTGAAGAATCCTCCGTCAGCGACAA33TGAAGCCTAAACCTCGCATCGGAACTTTACTAATAAAGCAAGAATCTGTAGTAGT
BOGAK92TR BOGA Brassica oleracea genomic clone BOGAK92, genomic survey sequence.
BH249677.1:504-528
CGCTGACGGAGGATTCTTCAATTACGCCAA504TGAAGCCTAAACCTCGCATCGGAACTTTACTAATAAAGCAAGAATCTGTAGTAGT
Brassica napus genome assembly, chromosome: C09.
HG994373.1:63065783-63065807
CGCTGACGGAGGATTCTTCAATTACGCCAA63065783TGAAGCCTAAACCTCGCATCGGAACTTTACTAATAAAGCAAGAATCTGTAGTAGT
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:61127358-61127382
CGCTGACGGAGGATTCTTCAATTACGCCAA61127358TGAAGCCTAAACCTCGCATCGGAACTTTACTAATAAAGCAAGAATCTGTAGTAGT
BOICB65TR BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOICB65, genomic survey sequence.
CC955443.1:381-405
ACTACTACAGATTCTTGCTTTATTAGTAAA381GTTCCGATGCGAGGTTTAGGCTTCATTGGCGTAATTGAAGAATCCTCCGTCAGCG
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:2306179-2306203
ACTACTACAGATTCTTGCTTTATTAGTAAA2306179GTTCCGATGCGAGGTTTAGGCTTCATTGGCGTAATTGAAGAATCCTCCGTCAGCG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGAAGCCTAAACCTCGCATCGGAAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAAGCCTAAACCTCGCATCGGAAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.246 | 0.237 | search_plus_done; http://172.18.8.135:50400/match?q=TGAAGCCTAAACCTCGCATCGGAAC&k=0&no_gap=0&offset=0&limit=50
0.350 | 0.104 | search_minus_done; http://172.18.8.135:50400/match?q=GTTCCGATGCGAGGTTTAGGCTTCA&k=0&no_gap=0&offset=0&limit=46
0.351 | 0.001 | cgi_end;

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