GGGenome | Results

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2025-04-09 12:41:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

odh52d03.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH959707.1:343-362

CATTCTTGTTTCTTGATTCTAACTGCATCT343GCTTCGCTCTTTGTGATTCACTCAGCTGAAGAAGCATCTTATCACTGCTA

Brassica oleracea lysine-ketoglutarate reductase/saccharopine dehydrogenase gene, partial cds.
AF191667.1:1331-1350

CATTCTTGTTTATTGATTCTAAGTCACTCT1331GCTTCGCTCTTTGTGATTCACTCAGCTGAAGAAGCATCTTATCACTGCTA

Brassica napus genome assembly, chromosome: C01.
HG994365.1:2898517-2898536

CATTCTTGTTTATTGATTCTAAGTCACTCT2898517GCTTCGCTCTTTGTGATTCACTCAGCTGAAGAAGCATCTTATCACTGCTA

Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:2845552-2845571

CATTCTTGTTTATTGATTCTAAGTCACTCT2845552GCTTCGCTCTTTGTGATTCACTCAGCTGAAGAAGCATCTTATCACTGCTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.107 | 0.098 | search_plus_done; http://172.18.8.135:50400/match?q=TGAATCACAAAGAGCGAAGC&k=0&no_gap=0&offset=0&limit=50
0.148 | 0.041 | search_minus_done; http://172.18.8.135:50400/match?q=GCTTCGCTCTTTGTGATTCA&k=0&no_gap=0&offset=0&limit=50
0.151 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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