GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 23:10:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TP_ABb0004O22.f TP_ABb Trifolium pratense genomic clone TP_ABb0004O22 5', genomic survey sequence.
HR254286.1:456-475
AGTGCCATGTTGGAGTTGTTTTTGTTTTGT456TGAATGAGGAAAACGGTTCCCATTGCACCTTTACCTAAGATTTTGAGTGG
Trifolium dubium genome assembly, chromosome: 7.
OX638068.1:2259897-2259916
AGTGCCATGTAGGAGGAGTTGTTGTTTTGT2259897TGAATGAGGAAAACGGTTCCCATTGCTCCTTTACCTAAGATTTTGAGTGG
Odontocerum albicorne genome assembly, chromosome: 25.
OX463863.1:20269935-20269954
GAGATGCGAAGAGAATAATCTGAGAATGAA20269935TGAATGAGGAAAACGGTTCCGAGCTTCTACCCGAACGGACGTGTAGTGCC
Odontocerum albicorne genome assembly, chromosome: 25.
OX463863.1:20493716-20493735
GAGATGCGAAGAGAATAATCTGAGAATGAA20493716TGAATGAGGAAAACGGTTCCGAGCTTCTACCCGAACGGACGTGTAGTGCC
Pasiphila rectangulata genome assembly, chromosome: 11.
OY720246.1:9533655-9533674
TTGTTCAGATTTAACAAACAAAAGGATTTT9533655TGAATGAGGAAAACGGTTCCTATCATGTTTAACAATCCATTTACTTCTCA
Pyrrhosoma nymphula genome assembly, chromosome: 10.
OY754337.1:129676348-129676367
TGTTGGTGGTGGTGGAGTGTGTACGCGACA129676348TGAATGAGGAAAACGGTTCCATCTCCCCGGGTTGCTTAATCATAATGGAA
Trifolium repens mRNA, clone: WCC19g16, unspecified EST.
FY460747.1:133-152
CCACTCAAAATCTTAGGCAAAGGAGCAATG133GGAACCGTTTTCCTCATTCAACAAAACAACAACAACAACAACAACAACAA
Trifolium repens mRNA, clone: WCC23j13_006, unspecified EST.
FY462223.1:152-171
CCACTCAAAATCTTAGGCAAAGGAGCAATG152GGAACCGTTTTCCTCATTCAACAAAACAACAACAACAACAACAACAACAA
Trifolium repens isolate ACLI19 chromosome 06_Pall.
CP125847.1:58347872-58347891
CCACTCAAAATCTTAGGCAAAGGAGCAATG58347872GGAACCGTTTTCCTCATTCAACAAAACAACAACAACAACAATATGGCACT
Trifolium dubium genome assembly, chromosome: 9.
OX638070.1:38166745-38166764
CCACTCAAAATCTTAGGTAAAGGAGCAATG38166745GGAACCGTTTTCCTCATTCAACAAAACAACAACTCCTCCTACATGGCACT
Sympetrum striolatum genome assembly, chromosome: 10.
OX388350.1:79212839-79212858
CGCGAGATCATTAATTCGGATTCGCTGATT79212839GGAACCGTTTTCCTCATTCATGATTCAATCGCTCCGGATACAAACATTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGAATGAGGAAAACGGTTCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAATGAGGAAAACGGTTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.138 | 0.129 | search_plus_done; http://172.18.8.135:50400/match?q=TGAATGAGGAAAACGGTTCC&k=0&no_gap=0&offset=0&limit=50
0.330 | 0.193 | search_minus_done; http://172.18.8.135:50400/match?q=GGAACCGTTTTCCTCATTCA&k=0&no_gap=0&offset=0&limit=44
0.334 | 0.004 | cgi_end;

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