GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 20:34:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BOIDT09TF BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIDT09, genomic survey sequence.
CC949794.1:255-274
TATTGGGGAGCTAAGATAACATCCAAATAT255TGAATGCCTTTACCAGAAGTTATGGTCTTTACATGAGATCAGTGAAGTGA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB019A15, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces.
AC189249.1:128592-128611
TATTGGGGAGCTAAGATAACATCCAAATAT128592TGAATGCCTTTACCAGAAGTTATGGTCGGTCTTTACATGAGATCAGTGAA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB074G23, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC189460.2:1518-1537
TATTGGGGAGCTAAGATAACATCCAAATAT1518TGAATGCCTTTACCAGAAGTTATGGTCGGTCTTTACATGAGATCAGTGAA
Brassica napus genome assembly, chromosome: A08.
HG994362.1:13095335-13095354
TATTGGGGAGCTAAGATAACATCCAAATAT13095335TGAATGCCTTTACCAGAAGTTATGGTCGGTCTTTACATGAGATCAGTGAA
Brassica rapa genome, scaffold: A08.
LR031575.1:11919690-11919709
CACAACATCACATCAAATCATATTGAAGAT11919690TGAATGCCTTTACCAGAAGTTATGGTCTTTACATGAGATCAGTGAAGTCA
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:20035975-20035994
TATTGGGGAGCTAAGATAACATCCAAATAT20035975TGAATGCCTTTACCAGAAGTTATGGTCTTTACATGAGATCAGTGAAGTCA
Brassica rapa genome assembly, chromosome: A08.
LS974624.2:17727893-17727912
CACAACATCACATCAAATCATATTGAAGAT17727893TGAATGCCTTTACCAGAAGTTATGGTCTTTACATGAGATCAGTGAAGTCA
KBrB028P15F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB028P15, genomic survey sequence.
DX031988.1:709-728
TTCACTGATCTCATGTAAAGACCGACCATA709ACTTCTGGTAAAGGCATTCAATATTTGGATGTTATCTTAGCTCCCCAATA
KBrB117O19F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB117O19, genomic survey sequence.
ED528000.1:731-750
TTCACTGATCTCATGTAAAGACCGACCATA731ACTTCTGGTAAAGGCATTCAATATTTGGATGTTATCTTAGCTCCCCAATA
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:13349165-13349184
TTCACTGATCTCATGTAAAGACCGACCATA13349165ACTTCTGGTAAAGGCATTCAATATTTGGATGTTATCTTAGCTCCCCAATA
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:32115505-32115524
TCACTTCACTGATCTCATGTAAAGACCATA32115505ACTTCTGGTAAAGGCATTCAATATTTGGATGTTATCTTAGCTCCCCAATA
Viola odorata genome assembly, chromosome: 6.
OY829542.1:28623463-28623482
CAAAACAACAAAGATAATAAAAACAACAAA28623463ACTTCTGGTAAAGGCATTCACACGAAAGGGGAAACTTAAAAAGGACAACA
Polietes domitor genome assembly, chromosome: 2.
OX377619.1:39911547-39911566
AAATTGAATAAAATTAACACTTTAAAATAC39911547ACTTCTGGTAAAGGCATTCATGTGTGACAGTGGGCTAGAGCAGCAGGTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGAATGCCTTTACCAGAAGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAATGCCTTTACCAGAAGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.136 | 0.127 | search_plus_done; http://172.18.8.135:50400/match?q=TGAATGCCTTTACCAGAAGT&k=0&no_gap=0&offset=0&limit=50
0.196 | 0.060 | search_minus_done; http://172.18.8.135:50400/match?q=ACTTCTGGTAAAGGCATTCA&k=0&no_gap=0&offset=0&limit=43
0.199 | 0.004 | cgi_end;

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