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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-18 02:49:06, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

EST11033772 MNFG2 library Cucumis melo cDNA clone BA3YN01RM1, mRNA sequence.
JG492059.1:326-345
TGGCTGAAACAGCAGTTGGCCCCTCCACCT326TGAATTTTGCTCCCCAAATCTCTTCTTCAGGAGCAGGTTCAGCAGTAATC
EST11053099 VFTP2 library Cucumis melo cDNA clone HA2YO22RM1, mRNA sequence.
JG511386.1:325-344
TGGCTGAAACAGCAGTTGGCCCCTCCACCT325TGAATTTTGCTCCCCAAATCTCTTCTTCAGGAGCAGGTTCAGCAGTAATC
EST11053109 VFTP2 library Cucumis melo cDNA clone HA1YP20RM1, mRNA sequence.
JG511396.1:325-344
TGGCTGAAACAGCAGTTGGCCCCTCCACCT325TGAATTTTGCTCCCCAAATCTCTTCTTCAGGAGCAGGTTCAGCAGTAATC
EST11093230 PFTP2 library Cucumis melo cDNA clone IA9YP20RM1, mRNA sequence.
JG551517.1:320-339
TGGCTGAAACAGCAGTTGGCCCCTCCACCT320TGAATTTTGCTCCCCAAATCTCTTCTTCAGGAGCAGGTTCAGCAGTAATC
Y3F11 Melon Yulu Forward SSH library Cucumis melo cDNA, mRNA sequence.
JK999862.1:189-208
TGGCTGAAACAGCAGTTGGCCCCTCCACCT189TGAATTTTGCTCCCCAAATCTCTTCTTCAGGAGCAGGTTCAGCAGTAATC
TSA: Cucumis sativus var. sativus cultivar Vlaspik CuSa200910_2735, mRNA sequence.
JW920904.1:705-724
GTAATTTAGTAATTTGATAATGGCGTACCT705TGAATTTTGCTCCCCAAATCTCTTCTTCAGGAGCAGGTTCAGCAGTAATC
TSA: Cucumis sativus var. sativus cultivar Vlaspik CuSa200910_12195, mRNA sequence.
JW930351.1:7-26
GTACCT7TGAATTTTGCTCCCCAAATCTCTTCTTCAGGAGCAGGTTCAGCAGTAATC
Symbiodinium minutum DNA, clone: SYB2F-079P04, reverse.
GA511760.1:82-101
GATACCTCGACATTTTGAACGGAATTTTGA82TGAATTTTGCTCCCCAAATCCCCCAAACTGGTGAGTGCGTTGATTTTTGG
Cucumis melo genomic chromosome, chr_11.
LN713265.1:26771653-26771672
GCAAATTGGTAATTTGATAATGACAAACCT26771653TGAATTTTGCTCCCCAAATCTCTTCTTCAGGAGCAGGTTCAGCAGTAATC
Dolichopus griseipennis genome assembly, chromosome: 2.
OY720442.1:108858277-108858296
GGATTTTTTTATCATATTACTATTAAAACA108858277TGAATTTTGCTCCCCAAATCCACAGTACAGTTTACATTGAGACTCAACCT
Xestobium rufovillosum genome assembly, chromosome: 2.
OZ014493.1:335858-335877
TTTGTTTTCGGTTTTGAGGAATATTCTCGG335858TGAATTTTGCTCCCCAAATCCTGTTCGCAGCGCCAGTTATGTTGTTGGAG
Xestobium rufovillosum genome assembly, chromosome: 6.
OZ014497.1:10301308-10301327
TTTGTTTTCGGTTTTGAGGAATATTCTCGG10301308TGAATTTTGCTCCCCAAATCCTGTTCGCAGCGCCAGTTATGTTGTTGGAG
Xestobium rufovillosum genome assembly, chromosome: 9.
OZ014500.1:19304726-19304745
TTTGTTTTCGGTTTTGAGGATTATTCTCGG19304726TGAATTTTGCTCCCCAAATCCTGTTCGCAGCGCCAGTTATGTTGTTGGAG
Orbicella franksi genome assembly, chromosome: 10.
OZ116707.1:29117838-29117857
GCCCTTAGCCCATACCAGAGCTAATTCAGC29117838TGAATTTTGCTCCCCAAATCCCCCCATCTATCGACACTATTGCGGCTGAT
Cucumis melo subsp. melo EST, clone CI_16-F06-M13R.
AM731512.2:401-420
GATTACTGCTGAACCTGCTCCTGAAGAAGA401GATTTGGGGAGCAAAATTCAAGGTGGAGGGGCCAACTGCTGTTTCAGCCA
Cucumis melo subsp. melo EST, clone CI_32-E06-M13R.
AM732744.2:760-779
GATTACTGCTGAACCTGCTCCTGAAGAAGA760GATTTGGGGAGCAAAATTCAAGGTGGAGGAGCCAACTGCTGTTTCAGCCA
EST1101075 Melon mature fruit library Cucumis melo cDNA clone FR10I6, mRNA sequence.
DV632479.1:79-98
GATTACTGCTGAACCTGCTCCTGAAGAAGA79GATTTGGGGAGCAAAATTCAAGGTGGAGGGGCCAACTGCTGTTTCAGCCA
EST1101562 Melon young fruit library Cucumis melo cDNA clone FR12E20, mRNA sequence.
DV632966.1:397-416
GATTACTGCTGAACCTGCTCCTGAAGAAGA397GATTTGGGGAGCAAAATTCAAGGTGGAGGGGCCAACTGCTGTTTCAGCCA
EST1102284 Dulce mature fruit library Cucumis melo cDNA clone FR14I6, mRNA sequence.
DV633688.1:554-573
GATTACTGCTGAACCTGCTCCTGAAGAAGA554GATTTGGGGAGCAAAATTCAAGGTGGAGGGGCCAACTGCTGTTTCAGCCA
EST1102756 Dulce mature fruit library Cucumis melo cDNA clone FR15P3, mRNA sequence.
DV634160.1:463-482
GATTACTGCTGAACCTGCTCCTGAAGAAGA463GATTTGGGGAGCAAAATTCAAGGTGGAGGGGCCAACTGCTGTTTCAGCCA
EST1102800 Tam Dew mature fruit library Cucumis melo cDNA clone FR16B6, mRNA sequence.
DV634204.1:434-453
GATTACTGCTGAACCTGCTCCTGAAGAAGA434GATTTGGGGAGCAAAATTCAAGGTGGAGGGGCCAACTGCTGTTTCAGCCA
EST11010518 CM-PEa library Cucumis melo cDNA clone PEa0016I24, mRNA sequence.
JG468805.1:647-666
GATTACTGCTGAACCTGCTCCTGAAGAAGA647GATTTGGGGAGCAAAATTCAAGGTGGAGGGGCCAACTGCTGTTTCAGCCA
EST11022792 SFTP2 library Cucumis melo cDNA clone AA2YN03FM1, mRNA sequence.
JG481079.1:760-779
GATTACTGCTGAACCTGCTCCTGAAGAAGA760GATTTGGGGAGCAAAATTCAAGGTGGAGGGGC
EST11025659 SFTP2 library Cucumis melo cDNA clone AA8YH19FM1, mRNA sequence.
JG483946.1:760-779
GATTACTGCTGAACCTGCTCCTGAAGAAGA760GATTTGGGGAGCAAAATTCAGGGTGAGGGGCCAACTGCT
EST11026018 MNFG2 library Cucumis melo cDNA clone BA1YM03FM1, mRNA sequence.
JG484305.1:760-779
GATTACTGCTGAACCTGCTCCTGAAAAAGA760GATTTGGGGAGCAAAATTCAAGGTGGAGGGGGCCAACTGCTGTTTCAGCC
EST11029701 MNFG2 library Cucumis melo cDNA clone BA6YL17FM1, mRNA sequence.
JG487988.1:760-779
GATTACTGCTGAACCTGCTCCTGAAGAAGA760GATTTGGGGAGCAAAATTCAAGGTGGAGGGGCCAACTGCTGTTTCAGCCA
EST11032536 MNFG2 library Cucumis melo cDNA clone BA20YJ11FM1, mRNA sequence.
JG490823.1:765-784
GATTACTGCTGAACCTGCTCCTGAAGAAGA765GATTTGGGGAGCAAAATTCAAGGTGGAGGGGCCAACTGCCTGTTCAGCCC
EST11034284 MNRP2 library Cucumis melo cDNA clone CA1YP21FM1, mRNA sequence.
JG492571.1:760-779
GATTACTGCTGAACCTGCTCCTGAAGAAGA760GATTTGGGGAGCAAAATTCAAGGTGGAGGGGCCAACTGCTGTTTCAGCCA
EST11049871 VFTP2 library Cucumis melo cDNA clone HA2YO11FM1, mRNA sequence.
JG508158.1:760-779
GATTACTGCTGAACCTGCTCCTGAAGAAGA760GATTTGGGGAGCAAAATTCAAGGTGGAAGGGCCAACTGCTGTTTC
EST11050113 VFTP2 library Cucumis melo cDNA clone HA2YL06FM1, mRNA sequence.
JG508400.1:760-779
GATTACTGCTGAACCTGCTCCTGAAGAAGA760GATTTGGGGAGCAAAATTCAAGGTGGAGGGGCCAACTGCTGTTTTCAGCC
EST11050553 VFTP2 library Cucumis melo cDNA clone HA4YI01FM1, mRNA sequence.
JG508840.1:765-784
GATTACTGCTGAACCTGCTCCTGAAGAAGA765GATTTGGGGAGCAAAATTCAGGTGGGAGGGCCCACTGCTGTTT
EST11050593 VFTP2 library Cucumis melo cDNA clone HA4YO11FM1, mRNA sequence.
JG508880.1:760-779
GATTACTGCTGAACCTGCTCCTGAAGAAGA760GATTTGGGGAGCAAAATTCAAGGTGG
EST11051667 VFTP2 library Cucumis melo cDNA clone HA5YI21FM1, mRNA sequence.
JG509954.1:760-779
GATTACTGCTGAACCTGCTCCTGAAGAAGA760GATTTGGGGAGCAAAATTCAAGGTGGAGGGGCCAACTGCTGTTTCAGCCA
EST11051860 VFTP2 library Cucumis melo cDNA clone HA5YL19FM1, mRNA sequence.
JG510147.1:760-779
GATTACTGCTGAACCTGCTCCTGAAGAAGA760GATTTGGGGAGCAAAATTCAAGGTGGAGGGGGCCACTGCTGTTTCAGCCA
EST11051878 VFTP2 library Cucumis melo cDNA clone HA5YP07FM1, mRNA sequence.
JG510165.1:760-779
GATTACTGCTGAACCTGCTCCTGAAGAAGA760GATTTGGGGAGCAAAATTCAAGGTGGAGGGGCCAACTGCTGTTTCAGCCA
EST11052314 VFTP2 library Cucumis melo cDNA clone HA6YL06FM1, mRNA sequence.
JG510601.1:760-779
GATTACTGCTGAACCTGCTCCTGAAGAAGA760GATTTGGGGAGCAAAATTCAAGGTGGAGGGGCCAACCTGCTGTTT
EST11052928 VFTP2 library Cucumis melo cDNA clone HA9YP11FM1, mRNA sequence.
JG511215.1:760-779
GATTACTGCTGAACCTGCTCCTGAAAAAGA760GATTTGGGGAGCAAAATTCAAGGTGGAGGGGGCCACTGCTGTTTCAGCCA
EST11057667 DFTP2 library Cucumis melo cDNA clone LA4YF16FM1, mRNA sequence.
JG515954.1:760-779
GATTACTGCTGAACCTGCTCCTGAAGAAGA760GATTTGGGGAGCAAAATTCAAGGTGGAGGGGCCAACTGCTGTTTCAGCCA
EST11058322 DFTP2 library Cucumis melo cDNA clone LA6YJ11FM1, mRNA sequence.
JG516609.1:759-778
GATTACTGCTGAACCTGCTCCTGAAGAAGA759GATTTGGGGAGCAAAATTCAAGGTGGAGGGGCCAACTGCTGTTTCAGCCA
EST11058991 DFTP2 library Cucumis melo cDNA clone LA3YO08FM1, mRNA sequence.
JG517278.1:760-779
GATTACTGCTGAACCTGCTCCTGAAGAAGA760GATTTGGGGAGCAAAATTCAAGGTGGAGGGGCCAACTGCTGTTCCCGCCA
EST11059264 DFTP2 library Cucumis melo cDNA clone LA8YB09FM1, mRNA sequence.
JG517551.1:760-779
GATTACTGCTGAACCTGCTCCTGAAAAAGA760GATTTGGGGAGCAAAATTCAAGGTGGAGGGGCCAACTGCTGT
EST11059456 DFTP2 library Cucumis melo cDNA clone LA8YD12FM1, mRNA sequence.
JG517743.1:760-779
GATTACTGCTGAACCTGCTCCTGAAGAAGA760GATTTGGGGAGCAAAATTCAAGGTGGAGGGGCCAACTGCTGTTTCAGCCA
EST11081336 PFTP2 library Cucumis melo cDNA clone IA6YA19FM1, mRNA sequence.
JG539623.1:760-779
GATTACTGCTGAACCTGCTCCTGAAGAAGA760GATTTGGGGAGCAAAATTCAAGGTGGAGGGGCCAACTG
EST11082899 PFTP2 library Cucumis melo cDNA clone IA3YO15FM1, mRNA sequence.
JG541186.1:759-778
GATTACTGCTGAACCTGCTCCTGAAGAAGA759GATTTGGGGAGCAAAATTCAAGGTGGAGGGGCCAACTGCTGTTTCAGCCA
EST11084279 PFTP2 library Cucumis melo cDNA clone IA9YP20FM1, mRNA sequence.
JG542566.1:749-768
GATTACTGCTGAACCTGCTCCTGAAGAAAA749GATTTGGGGAGCAAAATTCAAGGTGGAGGGGCCAACTGCTGTT
EST11089770 PFTP2 library Cucumis melo cDNA clone IA23YJ09FM1, mRNA sequence.
JG548057.1:760-779
GATTACTGCTGAACCTGCTCCTGAAGAAGA760GATTTGGGGAGCAAAATTCAAGGTGGAGGGGGCAACTGCTG
EST11090232 PFTP2 library Cucumis melo cDNA clone IA25YJ04FM1, mRNA sequence.
JG548519.1:760-779
GATTACTGCTGAACCTGCTCCTGAAGAAGA760GATTTGGGGAGCAAAATTCAAGGTGGAGGGGCCAAC
Y3B9 Melon Yulu Forward SSH library Cucumis melo cDNA, mRNA sequence.
JK999828.1:385-404
GATTACTGCTGAACCTGCTCCTGAAGAAGA385GATTTGGGGAGCAAAATTCAAGGTGGAGGGGCCAACTGCTGTTTCAGCCA
TSA: Cucumis sativus var. sativus cultivar Vlaspik CuSa200910_2040, mRNA sequence.
JW920209.1:721-740
GATTACTGCTGAACCTGCTCCTGAAGAAGA721GATTTGGGGAGCAAAATTCAAGGTGGAGGGGCCAACTGGTGTATTAGCCA
TSA: Cucumis sativus var. sativus cultivar Vlaspik CuSa200910_2383, mRNA sequence.
JW920552.1:743-762
GATTACTGCTGAACCTGCTCCTGAAGAAGA743GATTTGGGGAGCAAAATTCAAGGTGGAGGGGCCAACTGGTGTATTAGCCA
TSA: Cucumis sativus var. sativus cultivar Vlaspik CuSa200910_12203, mRNA sequence.
JW930359.1:182-201
GATTACTGCTGAACCTGCTCCTGAAGAAGA182GATTTGGGGAGCAAAATTCAAGGTGGAGGGGCCAACTGGTGTATTAGCCA
Cucumis melo isolate PI 511890 chromosome 11.
CP136111.1:4592042-4592061
GATTACTGCTGAACCTGCTCCTGAAGAAGA4592042GATTTGGGGAGCAAAATTCAAGGTTTGTCATTATCAAATTACCAATTTGC
Cucumis melo genomic scaffold, anchoredscaffold00047.
LN681924.1:2196640-2196659
GATTACTGCTGAACCTGCTCCTGAAGAAGA2196640GATTTGGGGAGCAAAATTCAAGGTTTGTCATTATCAAATTACCAATTTGC
Agriphila tristella genome assembly, chromosome: 7.
OV743436.1:21904910-21904929
GGGCGCAACCCTCAGGGGGCGCGCTTTGCT21904910GATTTGGGGAGCAAAATTCAAATCTTGCCAGGGGTGCTCATTATCCTAGA
Xestobium rufovillosum genome assembly, chromosome: 2.
OZ014493.1:6892058-6892077
CTCCAACAACATAACTGGCGCTGCGAACAG6892058GATTTGGGGAGCAAAATTCACCGAGAATATTCCTCAAAACCGAAAACAAA
Xestobium rufovillosum genome assembly, chromosome: 5.
OZ014496.1:391935-391954
CTCTGAAAACATAACTGGCGCTGCGAACAG391935GATTTGGGGAGCAAAATTCACCGAGAATATTCCCAATCCAAATGCCCACT
Xestobium rufovillosum genome assembly, chromosome: 6.
OZ014497.1:15008026-15008045
CTCCAACAACATAACTGGCGCTGCGAACAG15008026GATTTGGGGAGCAAAATTCACCGAGAATATTCCTCAAAACCGAAAACAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGAATTTTGCTCCCCAAATC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAATTTTGCTCCCCAAATC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.660 | 0.651 | search_plus_done; http://172.18.8.135:50800/match?q=TGAATTTTGCTCCCCAAATC&k=0&no_gap=0&offset=0&limit=50
3.332 | 2.671 | search_minus_done; http://172.18.8.135:50800/match?q=GATTTGGGGAGCAAAATTCA&k=0&no_gap=0&offset=0&limit=36
3.360 | 0.028 | cgi_end;

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