GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-12 12:04:03, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

0206479 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV140551.1:25-44
TAAGCTGATGTGGATCTTTGAAAT25TGACACGAACCGAAGTCTGAGGTTTATGCATAATGTATGTGGTTGTTAAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010N11, complete sequence.
AC189573.1:65966-65985
ATAAACAGCTGCATGTGGTATCTTTGAAAT65966TGACACGAACCGAAGTCTGAGGTTTAATGCATAATGTATGTGGTTGTTAA
Brassica napus genome assembly, chromosome: A10.
HG994364.1:1089038-1089057
ATAAACAGCTGCATGTGGTATCTTTGAAAT1089038TGACACGAACCGAAGTCTGAGGTTTAATGCATAATGTATGTGGTTGTTAA
Brassica rapa genome, scaffold: A10.
LR031577.1:1114670-1114689
ATAAACAGCTGCATGTGGTATCTTTGAAAT1114670TGACACGAACCGAAGTCTGAGGTTTAATGCATAATGTATGTGGTTGTTAA
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:1112168-1112187
ATAAACAGCTGCATGTGGTATCTTTGAAAT1112168TGACACGAACCGAAGTCTGAGGTTTAATGCATAATGTATGTGGTTGTTAA
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:12564924-12564943
TTAACAACCACATACATTATGCATTAAACC12564924TCAGACTTCGGTTCGTGTCAATTTCAAAGATACCACATGCAGCTGTTTAT
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:25653161-25653180
TTAACAACCACATACATTATGCATTAAACC25653161TCAGACTTCGGTTCGTGTCAATTTCAAAGATACCACATGCAGCTGTTTAT
Brassica napus cultivar Xiang5A chromosome 14.
CP123889.1:1420922-1420941
TTAACAACCACATACATTATGCATTAAACC1420922TCAGACTTCGGTTCGTGTCAATTTCAAAGATACCACATGCAGCTGTTTAT
Brassica napus genome assembly, chromosome: A04.
HG994358.1:1320421-1320440
TTAACAACCACATACATTATGCATTAAACC1320421TCAGACTTCGGTTCGTGTCAATTTCAAAGATACCACATGCAGCTGTTTAT
Brassica rapa genome, scaffold: A09.
LR031568.1:43839826-43839845
TTAACAACCACATACATTATGCATTAAACC43839826TCAGACTTCGGTTCGTGTCAATTTCAAAGATACCACATGCAGCTGTTTAT
Brassica rapa genome, scaffold: A09.
LR031568.1:54437783-54437802
TTAACAACCACATACATTATGCATTAAACC54437783TCAGACTTCGGTTCGTGTCAATTTCAAAGATACCACATGCAGCTGTTTAT
Brassica rapa genome, scaffold: A04.
LR031576.1:1307418-1307437
TTAACAACCACATACATTATGCATTAAACC1307418TCAGACTTCGGTTCGTGTCAATTTCAAAGATACCACATGCAGCTGTTTAT
Brassica rapa genome assembly, chromosome: A04.
LS974620.2:1329669-1329688
TTAACAACCACATACATTATGCATTAAACC1329669TCAGACTTCGGTTCGTGTCAATTTCAAAGATACCACATGCAGCTGTTTAT
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:54289364-54289383
TTAACAACCACATACATTATGCATTAAACC54289364TCAGACTTCGGTTCGTGTCAATTTCAAAGATACCACATGCAGCTGTTTAT
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:64961341-64961360
TTAACAACCACATACATTATGCATTAAACC64961341TCAGACTTCGGTTCGTGTCAATTTCAAAGATACCACATGCAGCTGTTTAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGACACGAACCGAAGTCTGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGACACGAACCGAAGTCTGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.161 | 0.152 | search_plus_done; http://172.18.8.135:50400/match?q=TGACACGAACCGAAGTCTGA&k=0&no_gap=0&offset=0&limit=50
0.200 | 0.039 | search_minus_done; http://172.18.8.135:50400/match?q=TCAGACTTCGGTTCGTGTCA&k=0&no_gap=0&offset=0&limit=45
0.207 | 0.007 | cgi_end;

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