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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-17 02:57:19, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a015B21_T7.
AM391042.1:528-547
CGATGCTGACGTAGCTGAAGAAGAGCGTCC528TGACCCTGAGTTGGACCCTAAAGTAACTAAATTATACAAAGGTGTTGCCA
Brassica oleracea var. viridis mRNA, clone: KALE-045J08, 5' end sequence.
DK472967.1:560-579
CGATGCTGACGTAGCTGAAGAAGAGCGTCC560TGACCCTGAGTTGGACCCTAAAGTAACTAAATTATACAAAGGTGTTGCCA
Brassica oleracea var. viridis mRNA, clone: KALE-077N04, 5' end sequence.
DK485303.1:561-580
CGATGCTGACGTAGCTGAAGAAGAGCGTCC561TGACCCTGAGTTGGACCCTAAAGTAACTAAATTATACAAAGGTGTTGCCA
Brassica oleracea var. viridis mRNA, clone: KALE-150B04, 5' end sequence.
DK512930.1:560-579
CGATGCTGACGTAGCTGAAGAAGAGCGTCC560TGACCCTGAGTTGGACCCTAAAGTAACTAAATTATACAAAGGTGTTGCCA
Brassica oleracea var. viridis mRNA, clone: KALE-150J19, 5' end sequence.
DK513137.1:507-526
CGATGCTGACGTAGCTGAAGAAGAGCGTCC507TGACCCTGAGTTGGACCCTAAAGTAACTAAATTATACAAAGGTGTTGCCA
32ETGS24_UP_007_G09_11MAR2004_067 Brassica napus 32ETGS24 Brassica napus cDNA 5', mRNA sequence.
EE426086.1:552-571
GATGCTGACTTAGCTGAAGAAAGAGCGTCC552TGACCCTGAGTTGGACCCTAAAGTAACTAAATTATACAAAGGTGTTGCCA
37RDBRH_UP_008_B04_29MAR2004_030 Brassica rapa 37RDBRH Brassica rapa cDNA 5', mRNA sequence.
EE522771.1:457-476
CGATGCTGACTTAGCTGAAGAAGAGCGTCC457TGACCCTGAGTTGGACCCTAAAGTAACTAAATTATACAAAGGTGTTGCCA
BNARO6GH_T3_027_A05_07DEC2006_047 Brassica napus BNARO6GH Brassica napus cDNA 5', mRNA sequence.
ES911179.1:524-543
CGATGCTGACTTAGCTGAAGAAGAGCGTCC524TGACCCTGAGTTGGACCCTAAAGTAACTAAATTATACAAAGGTGTTGCCA
BNSCS3CT_UP_219_E08_13MAY2007_056 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV054225.1:550-569
CGATGCTGACGTAGCTGAAGAAGAGCGTCC550TGACCCTGAGTTGGACCCTAAAGTAACTAAATTATACAAAGGTGTTGCCA
0122653 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV117341.1:563-582
CGATGCTGACGTAGCTGAAGAAGAGCGTCC563TGACCCTGAGTTGGACCCTAAAGTAACTAAATTATACAAAGGTGTTGCCA
0129495 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV124183.1:575-594
CGATGCTGACGTAGCTGAAGAAGAGCGTCC575TGACCCTGAGTTGGACCCTAAAGTAACTAAATTATACAAAGGTGTTGCCA
0129536 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV124224.1:577-596
CGATGCTGACGTAGCTGAAGAAGAGCGTCC577TGACCCTGAGTTGGACCCTAAAGTAACTAAATTATACAAAGGTGTTGCCA
0207947 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV142016.1:571-590
CGATGCTGACGTAGCTGAAGAAGAGCGTCC571TGACCCTGAGTTGGACCCTAAAGTAACTAAATTATACAAAGGTGTTGCCA
BR029617 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-139C08 5', mRNA sequence.
EX044973.1:184-203
CGATGCTGACTTAGCTGAAGAAGAGCGTCC184TGACCCTGAGTTGGACCCTAAAGTAACTAAATTATACAAAGGGTAATGTT
BN18DYSC_UP_147_A07_4APR2008_063 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG565367.1:541-560
CGATGCTGACTTAGCTGAAGAAGAGCGTCC541TGACCCTGAGTTGGACCCTAAAGTAACTAAATTATACAAAGGTGTTGCCA
BN18DYSC_UP_201_E01_7APR2008_007 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG570134.1:532-551
CGATGCTGACTTAGCTGAAGAAGAGCGTCC532TGACCCTGAGTTGGACCCTAAAGTAACTAAATTATACAAAGGTGTTGCCA
Brassica rapa subsp. pekinensis mRNA, clone:BBRAF04B10, 5'-end sequence.
FY064809.1:548-567
CGATGCTGACTTAGCTGAAGAAGAGCGTCC548TGACCCTGAGTTGGACCCTAAAGTAACTAAATTATACAAAGGTGTTGCCA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_4938.
FX698178.1:556-575
CGATGCTGACTTAGCTGAAGAAGAGCGTCC556TGACCCTGAGTTGGACCCTAAAGTAACTAAATTATACAAAGGTGTTGCCA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_6317.
FX731668.1:554-573
CGATGCTGACTTAGCTGAAGAAGAGCGTCC554TGACCCTGAGTTGGACCCTAAAGTAACTAAATTATACAAAGGTGTTGCCA
BOT01-37E24TR BOT01 Brassica oleracea genomic clone BOT01-37E24, genomic survey sequence.
FI699414.1:576-595
TTTTTTTTATCTATATGCAGAAGAGCGTCC576TGACCCTGAGTTGGACCCTAAAGTAACTAAATTATACAAAGGGTAATGTT
BOT01-74K3TR BOT01 Brassica oleracea genomic clone BOT01-74K3, genomic survey sequence.
FI732793.1:580-599
TTTTTTTTATCTATATGCAGAAGAGCGTCC580TGACCCTGAGTTGGACCCTAAAGTAACTAAATTATACAAAGGGTAATGTT
Brassica napus cultivar Xiang5A chromosome 7.
CP151902.1:17046716-17046735
TTTTATCTATATATATGCAGAAGAGCGTCC17046716TGACCCTGAGTTGGACCCTAAAGTAACTAAATTATACAAAGGGTAATGTT
Brassica napus cultivar Xiang5A chromosome 17.
CP151912.1:25058311-25058330
TTTTTTTTATCTATATGCAGAAGAGCGTCC25058311TGACCCTGAGTTGGACCCTAAAGTAACTAAATTATACAAAGGGTAATGTT
Brassica napus genome assembly, chromosome: A07.
HG994361.1:10141400-10141419
TTTTATCTATATATATGCAGAAGAGCGTCC10141400TGACCCTGAGTTGGACCCTAAAGTAACTAAATTATACAAAGGGTAATGTT
Brassica napus genome assembly, chromosome: C07.
HG994371.1:19265820-19265839
TTTTTTTTATCTATATGCAGAAGAGCGTCC19265820TGACCCTGAGTTGGACCCTAAAGTAACTAAATTATACAAAGGGTAATGTT
Brassica rapa genome, scaffold: A07.
LR031574.1:9356406-9356425
TTTTATATCTATATATGCAGAAGAGCGTCC9356406TGACCCTGAGTTGGACCCTAAAGTAACTAAATTATACAAAGGGTAATGTT
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:22136655-22136674
TTTTTTTTATCTATATGCAGAAGAGCGTCC22136655TGACCCTGAGTTGGACCCTAAAGTAACTAAATTATACAAAGGGTAATGTT
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:9646282-9646301
TTTTATATCTATATATGCAGAAGAGCGTCC9646282TGACCCTGAGTTGGACCCTAAAGTAACTAAATTATACAAAGGGTAATGTT
Spermophilus citellus genome assembly, chromosome: 2.
OZ077379.1:122805267-122805286
TATGGCAATGTTTAGAGCTAGGGGTACTGT122805267TAGGGTCCAACTCAGGGTCACGGTTATTTCTATGGTTAGTGCTAGGACTC
Spermophilus citellus genome assembly, chromosome: 5.
OZ077382.1:26934291-26934310
TATGGCAATGTTTAAAGCTAGGGTTACTGT26934291TAGGGTCCAACTCAGGGTCAGGGTTATTTCTATGGTTAGAGTTAGCACTC
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:19383139-19383158
AACATTACCCTTTGTATAATTTAGTTACTT19383139TAGGGTCCAACTCAGGGTCAGGACGCTCTTCTGCATATATATAGATAAAA
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:36748751-36748770
AACATTACCCTTTGTATAATTTAGTTACTT36748751TAGGGTCCAACTCAGGGTCAGGACGCTCTTCTGCATATAGATAAAAAAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGACCCTGAGTTGGACCCTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGACCCTGAGTTGGACCCTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.063 | 1.054 | search_plus_done; http://172.18.8.135:50800/match?q=TGACCCTGAGTTGGACCCTA&k=0&no_gap=0&offset=0&limit=50
1.178 | 0.115 | search_minus_done; http://172.18.8.135:50800/match?q=TAGGGTCCAACTCAGGGTCA&k=0&no_gap=0&offset=0&limit=22
1.181 | 0.003 | cgi_end;

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