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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:13:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

010202AAMA002343HT (AAMA) Royal Gala spur bud autumn Malus domestica cDNA clone AAMA002343, mRNA sequence.
CN866680.1:117-138
GTCGGAGAAGATGAAAGAAGTAGTCATTGC117TGACGACATGAATGTTGATGTGATGAATATCGTGAGTGGCATAAGGACTTCA
010412AAOA009542HT (AAOA) Royal Gala phloem Malus domestica cDNA clone AAOA009542, mRNA sequence.
CN868201.1:78-99
GTCGGAGAAGATGAAAGAAGTAGTCATTGC78TGACGACATGAATGTTGATGTGATGAATATCGTGAGTGGCATAAGGACTTCA
Mdfw2057i16.y1 Mdfw Malus domestica cDNA clone Mdfw2057i16 5' similar to TR:Q9SH64 Q9SH64 F22C12.10, mRNA sequence.
CO052268.1:156-177
GTCGGAGAAGATGAAAGAAGTAGTCATTGC156TGACGACATGAATGTTGATGTGATGAATATCGTGAGTGGCATAAGGACTTCA
Mdst6023d12.y1 Mdst Malus domestica cDNA clone Mdst6023d12 5' similar to TR:Q9SH64 Q9SH64 F22C12.10, mRNA sequence.
CV794358.1:229-250
GTCAGAGAAGATGAAAGAAGTAGTCATTGC229TGACGACATGAATGTTGATGTGATGAATATCGTGAGTGGCATAAGGACTTCA
Mdfb8010F23.g1 Apple_EST_Mdfb Malus domestica cDNA similar to ref|NP_176596.2| expressed protein [Arabidopsis thaliana] pir|H96665 protein F22C12.10 [imported] - Arabidopsis thaliana gb|AAF24563.1|AC0
DR999566.1:396-417
GTCGGAGAAGATGAAAGAAGTAGTCATTGC396TGACGACATGAATGTTGATGTGATGAATATCGTGAGTGGCATAAGGACTTCA
010131AARA005282HT (AARA) Royal Gala partially senescing leaf Malus domestica cDNA clone AARA005282, mRNA sequence.
EB122045.1:358-379
GTCGGAGAAGATGAAAGAAGTAGTCATTGC358TGACGACATGAATGTTGATGTGATGAA
Mdfrb3149A20.g1 Apple_EST_Mdfrb Malus domestica cDNA 5' similar to ref|NP_176596.2| expressed protein [Arabidopsis thaliana] pir|H96665 protein F22C12.10 [imported] - Arabidopsis thaliana gb|AAF24563.
GO521763.1:197-218
GTCGGAGAAGATGAAAGAAGTAGTCATTGC197TGACGACATGAATGTTGATGTGATGAATATCGTGAGTGGCATAAGGACTTCA
Mdfwj2081J03.g1 Apple_EST_Mdfwj Malus domestica cDNA 5' similar to ref|NP_176596.2| expressed protein [Arabidopsis thaliana] pir|H96665 protein F22C12.10 [imported] - Arabidopsis thaliana gb|AAF24563.
GO543333.1:311-332
GTCAGAAAAAATGAAAGAAGTAGACATTGC311TGACGACATGAATGTTGATGTGATGAATATCGTGAGTGGCATAACGACTTCA
TSA: Pyrus communis mRNA, contig: lc6213.
FX614799.1:55-76
AGTCGGAGAAGATGANGAAGTAGTCATTGC55TGACGACATGAATGTTGATGTGATGAATATCGTGAGTGGCATAAGGACTTCA
TSA: Pyrus x bretschneideri Unigene22237_XinShao mRNA sequence.
JR616284.1:208-229
GTCGGAGAAGATGAAAGAAGTAGTCATTGC208TGACGACATGAATGTTGATGTGATGAATATCGTGAGTGGCATAAGGACTTCA
Malus hybrid cultivar cultivar Flame chromosome 6.
CP141915.1:12630133-12630154
GTCAGAGAAGATGAAAGAAGTAGTCATTGC12630133TGACGACATGAATGTTGATGTGATGAATATCGTGAGTGGCATAAGGACTTCA
Malus hybrid cultivar cultivar Flame chromosome 14.
CP141923.1:12522980-12523001
GTCGGAGAAGATGAAAGAAGTAGTCATTGC12522980TGACGACATGAATGTTGATGTGATGAATATCGTGAGTGGCATAAGGACTTCA
Malus hybrid cultivar cultivar Flame chromosome 6.
CP141932.1:13275618-13275639
GTCAGAGAAGATGAAAGAAGTAGTCATTGC13275618TGACGACATGAATGTTGATGTGATGAATATCGTGAGTGGCATAAGGACTTCA
Malus hybrid cultivar cultivar Flame chromosome 14.
CP141940.1:13248998-13249019
GTCGGAGAAGATGAAAGAAGTAGTCATTGC13248998TGACGACATGAATGTTGATGTGATGAATATCGTGAGTGGCATAAGGACTTCA
Malus hybrid cultivar cultivar Royalty chromosome 9.
CP141961.1:12492372-12492393
GTCAGAGAAGATGAAAGAAGTAGTCATTGC12492372TGACGACATGAATGTTGATGTGATGAATATCGTGAGTGGCATAAGGACTTCA
Malus hybrid cultivar cultivar Royalty chromosome 14.
CP141966.1:12278386-12278407
GTCGGAGAAGATGAAAGAAGTAGTCATTGC12278386TGACGACATGAATGTTGATGTGATGAATATCGTGAGTGGCATAAGGACTTCA
Malus hybrid cultivar cultivar Royalty chromosome 9.
CP141978.1:12457715-12457736
GTCAGAGAAGATGAAAGAAGTAGTCATTGC12457715TGACGACATGAATGTTGATGTGATGAATATCGTGAGTGGCATAAGGACTTCA
Malus hybrid cultivar cultivar Royalty chromosome 14.
CP141983.1:13522585-13522606
GTCGGAGAAGATGAAAGAAGTAGTCATTGC13522585TGACGACATGAATGTTGATGTGATGAATATCGTGAGTGGCATAAGGACTTCA
Malus x robusta genome assembly, chromosome: 15.
OY720339.1:13072730-13072751
GTCGGAGAAGATGAAAGAAGTAGTCATTGC13072730TGACGACATGAATGTTGATGTGATGAATATCGTGAGTGGCATAAGGACTTCA
Crataegus laevigata genome assembly, chromosome: 13.
OY756950.1:13445874-13445895
GAAGTCGGAGAAGATGAAAGTAGTCATTGC13445874TGACGACATGAATGTTGATGTGATGAATATCGTGAGTGGCACAAGGACTTCA
Crataegus laevigata genome assembly, chromosome: 16.
OY756953.1:13409542-13409563
GTTGGAGAAGATGAAAGAAGTAGTCATTGC13409542TGACGACATGAATGTTGATGTGATGAATATCGTGAGTGGCAGAAGGACTTCA
Malus hybrid cultivar cultivar SH6 chromosome 6.
CP143363.1:22124923-22124944
TGAAGTCCTTATGCCACTCACGATATTCAT22124923CACATCAACATTCATGTCGTCAGCAATGACTACTTCTTTCATCTTCTCTGAC
Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143371.1:18938279-18938300
TGAAGTCCTTATGCCACTCACGATATTCAT18938279CACATCAACATTCATGTCGTCAGCAATGACTACTTCTTTCATCTTCTCCGAC
Malus hybrid cultivar cultivar SH6 chromosome 6.
CP143380.1:20058858-20058879
TGAAGTCCTTATGCCACTCACGATATTCAT20058858CACATCAACATTCATGTCGTCAGCAATGACTACTTCTTTCATCTTCTCTGAC
Malus hybrid cultivar cultivar SH6 chromosome 14.
CP143388.1:16609461-16609482
TGAAGTCCTTACGCCACTCACGATATTCAT16609461CACATCAACATTCATGTCGTCAGCAATGACTACTTTCATCTTCTCCGACTTC
Malus sylvestris genome assembly, chromosome: 6.
OU696508.1:22267521-22267542
TGAAGTCCTTATGCCACTCACGGTATTCAT22267521CACATCAACATTCATGTCGTCAGCAATGACTACTTCTTTCATCTTCTCTGAC
Malus sylvestris genome assembly, chromosome: 14.
OU696516.1:17382594-17382615
TGAAGTCCTTATGCCACTCACGATATTCAT17382594CACATCAACATTCATGTCGTCAGCAATGACTACTTCTTTCATCTTCTCCGAC
Malus domestica genome assembly, chromosome: 6.
OU696682.1:22301520-22301541
TGAAGTCCTTATGCCACTCACGATATTCAT22301520CACATCAACATTCATGTCGTCAGCAATGACTACTTCTTTCATCTTCTCTGAC
Malus domestica genome assembly, chromosome: 14.
OU696690.1:18633658-18633679
TGAAGTCCTTATGCCACTCACGATATTCAT18633658CACATCAACATTCATGTCGTCAGCAATGACTACTTCTTTCATCTTCTCCGAC
Malus domestica genome assembly, chromosome: 6.
OU744547.1:22142483-22142504
TGAAGTCCTTATGCCACTCACGATATTCAT22142483CACATCAACATTCATGTCGTCAGCAATGACTACTTCTTTCATCTTCTCTGAC
Malus domestica genome assembly, chromosome: 14.
OU744555.1:18909336-18909357
TGAAGTCCTTATGCCACTCACGATATTCAT18909336CACATCAACATTCATGTCGTCAGCAATGACTACTTCTTTCATCTTCTCCGAC
Malus domestica genome assembly, chromosome: 6.
OU744958.1:22037749-22037770
TGAAGTCCTTATGCCACTCACGATATTCAT22037749CACATCAACATTCATGTCGTCAGCAATGACTACTTCTTTCATCTTCTCTGAC
Malus domestica genome assembly, chromosome: 14.
OU744966.1:18966765-18966786
TGAAGTCCTTATGCCACTCACGATATTCAT18966765CACATCAACATTCATGTCGTCAGCAATGACTACTTCTTTCATCTTCTCCGAC
Malus domestica genome assembly, chromosome: 6.
OU744996.1:18318662-18318683
TGAAGTCCTTATGCCACTCACGGTATTCAT18318662CACATCAACATTCATGTCGTCAGCAATGACTACTTCTTTCATCTTCTCTGAC
Malus domestica genome assembly, chromosome: 14.
OU745004.1:19091306-19091327
TGAAGTCCTTATGCCACTCACGATATTCAT19091306CACATCAACATTCATGTCGTCAGCAATGACTACTTCTTTCATCTTCTCCGAC
Malus x robusta genome assembly, chromosome: 14.
OY720338.1:18271090-18271111
TGAAGTCCTTATGCCACTCACGATATTCAT18271090CACATCAACATTCATGTCGTCAGCAATGACTACTTCTTTCATCTTCTCTGAC
Pyrus communis genome assembly, chromosome: 12.
OY757079.1:16594606-16594627
TGAAGTCCTTATGCCACTCACGATATTCAT16594606CACATCAACATTCATGTCGTCAGCAATGACTACTTCTTTCATCTTCTCCGAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGACGACATGAATGTTGATGTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGACGACATGAATGTTGATGTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.625 | 0.616 | search_plus_done; http://172.18.8.135:50400/match?q=TGACGACATGAATGTTGATGTG&k=0&no_gap=0&offset=0&limit=50
0.729 | 0.104 | search_minus_done; http://172.18.8.135:50400/match?q=CACATCAACATTCATGTCGTCA&k=0&no_gap=0&offset=0&limit=29
0.740 | 0.011 | cgi_end;

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