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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 14:29:53, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Mdfw2015c11.y1 Mdfw Malus domestica cDNA clone Mdfw2015c11 5' similar to TR:Q9SUE6 Q9SUE6 HYPOTHETICAL 21.7 KD PROTEIN, mRNA sequence.
CN489823.1:444-463
CTTGATCCAGTGCAATCTCAAATCTCTTTC444TGACGTCTCAGAGCGACTTGCGGTACCGGACCAAACTGAGCCAATTGAT
010421AASA005600HT (AASA) Royal Gala 10 DAFB fruit Malus domestica cDNA clone AASA005600, mRNA sequence.
CN879102.1:20-39
GCAATCTCAAATCTCTTTC20TGACGTCTCAGAGCGACTTGCGGTACAGGACCAAACTGAGCCAATTGATC
Mdfrt3031f08.y1 Mdfrt Malus domestica cDNA clone Mdfrt3031f08 5' similar to TR:Q9SUE6 Q9SUE6 HYPOTHETICAL 21.7 KD PROTEIN, mRNA sequence.
CO417795.1:478-497
CTTGATCCAGTGCAATCTCAAATCTCTTTC478TGACGTCTCAGAGCGACTTGCGGTACAGGACCAAACTGAGCCAATTGATC
Mdfrt3118g11.y1 Mdfrt Malus domestica cDNA clone Mdfrt3118g11 5' similar to TR:Q9SV27 Q9SV27 HYPOTHETICAL 262.6 KD PROTEIN, mRNA sequence.
CV794459.1:308-327
CTTGATCCAGTGCAATCTCAAATCTCTTTC308TGACGTCTCAGAGCGACTTGCGGTACAGGACCAAACTGAGCCAATTGATC
Mdfrs3137I03.g1 Apple_EST_Mdfrs Malus domestica cDNA 5' similar to ref|NP_200128.1| expressed protein [Arabidopsis thaliana] dbj|BAB08419.1| gene_id:MFH8.10 pir|T02893 similar to unknown protein [Arab
GO518847.1:366-385
CTTGATCCAGTGCAATCTCAAATCTCTTTC366TGACGTCTCAGAGCGACTTGCGGTACAGGACCAAACTGAGCCAATTGATC
Mdfrg3156B15.g1 Apple_EST_Mdfrg Malus domestica cDNA 5' similar to ref|NP_200128.1| expressed protein [Arabidopsis thaliana] dbj|BAB08419.1| gene_id:MFH8.10 pir|T02893 similar to unknown protein [Arab
GO523895.1:179-198
CTTGATCCAGTGCAATCTCAAATCTCTTTC179TGACGTCTCAGAGCGACTTGCGGTACAGGACCAAACTGAGCCAATTGATC
Mdwdr7511K14.g1 Apple_EST_Mdwdr Malus domestica cDNA 5' similar to ref|NP_200128.1| expressed protein [Arabidopsis thaliana] dbj|BAB08419.1| gene_id:MFH8.10 pir|T02893 similar to unknown protein [Arab
GO527927.1:346-365
CTTGATCCAGTGCAATCTCAAATCTCTTTC346TGACGTCTCAGAGCGACTTGCGGTACAGGACCAAACTGAGCCAATTGATC
Pyrus pyrifolia mRNA, clone: NFW2_31_23, 5' end sequence, expressed in flower bud.
HX764442.1:110-129
CTTGATCCAATGCAATCTCAAATCTCTTTC110TGACGTCTCAGAGCGACTTGCAGTACAGGACCAAACTGAGCCAATTGATC
Pyrus pyrifolia mRNA, clone: NFW2_35_51, 5' end sequence, expressed in flower bud.
HX764805.1:110-129
CTTGATCCAATGCAATCTCAAATCTCTTTC110TGACGTCTCAGAGCGACTTGCAGTACAGGACCAAACTGAGCCAATTGATC
TSA: Pyrus communis mRNA, contig: lc5546.
FX614133.1:468-487
CTTGATCCAATGCAATCTCAAATCTCTTTC468TGACGTCTCAGAGCGACTTGCAGTACAGGACCAAACTGAGCCAATTGATC
TSA: Pyrus communis mRNA, contig: lc24235.
FX632650.1:14-33
CTCAAATCTCTTC14TGACGTCTCAGAGCGACTTGCAGTACAGGACCAAACTGAGCCAATTGATC
Malus x robusta genome assembly, chromosome: 12.
OY720336.1:1730279-1730298
CTTGATCCAGTGCAATCTCAAATCTCTTTC1730279TGACGTCTCAGAGCGACTTGCGGTACAGGACCAAACTGAGCCAATTGATC
Crataegus laevigata genome assembly, chromosome: 14.
OY756951.1:1972404-1972423
CTTGATCCAGTGCAATCTCAAATCTCTTTC1972404TGACGTCTCAGAGCGACTTGCGGTACAGGACCAAACCGAGCCAATTGATC
Pyrus communis genome assembly, chromosome: 16.
OY757083.1:1494440-1494459
CTTGATCCAATGCAATCTCAAATCTCTTTC1494440TGACGTCTCAGAGCGACTTGCAGTACAGGACCAAACTGAGCCAATTGATC
Mdfrt3031F08_e8256.g1 Mdfrt Malus domestica cDNA 5' similar to ref|NP_200128.1| expressed protein [Arabidopsis thaliana] dbj|BAB08419.1| gene_id:MFH8.10 pir|T02893 similar to unknown protein [Arabidop
GO559733.1:423-442
GATCAATTGGCTCAGTTTGGTCCTGTACCG423CAAGTCGCTCTGAGACGTCAGAAAGAGATTTGAGATTGCACTGGATCAAG
Mdfrs3141M06_e7965.b1 Apple_EST_Mdfrs Malus domestica cDNA 3' similar to ref|NP_200128.1| expressed protein [Arabidopsis thaliana] dbj|BAB08419.1| gene_id:MFH8.10 pir|T02893 similar to unknown protein
GO567457.1:389-408
GATCAATTGGCTCAGTTTGGTCCTGTACCG389CAAGTCGCTCTGAGACGTCAGAAAGAGATTTGAGATTGCACTGGATCAAG
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:42505885-42505904
GATCAATTGGCTCAGTTTGGTCCTGTACCG42505885CAAGTCGCTCTGAGACGTCAGAAAGAGATTTGAGATTGCACTGGATCAAG
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:31998162-31998181
GATCAATTGGCTCAGTTTGGTCCTGTACCG31998162CAAGTCGCTCTGAGACGTCAGAAAGAGATTTGAGATTGCACTGGATCAAG
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:30247350-30247369
GATCAATTGGCTCAGTTTGGTCCTGTACCG30247350CAAGTCGCTCTGAGACGTCAGAAAGAGATTTGAGATTGCACTGGATCAAG
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:32016497-32016516
GATCAATTGGCTCAGTTTGGTCCTGTACCG32016497CAAGTCGCTCTGAGACGTCAGAAAGAGATTTGAGATTGCACTGGATCAAG
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:31627629-31627648
GATCAATTGGCTCAGTTTGGTCCTGTACCG31627629CAAGTCGCTCTGAGACGTCAGAAAGAGATTTGAGATTGCACTGGATCAAG
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143375.1:30022206-30022225
GATCAATTGGCTCAGTTTGGTCCTGTACCG30022206CAAGTCGCTCTGAGACGTCAGAAAGAGATTTGAGATTGCACTGGATCAAG
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:28466674-28466693
GATCAATTGGCTCAGTTTGGTCCTGTACCG28466674CAAGTCGCTCTGAGACGTCAGAAAGAGATTTGAGATTGCACTGGATCAAG
Malus domestica genome assembly, chromosome: 1.
OU696677.1:28451731-28451750
GATCAATTGGCTCAGTTTGGTCCTGTACCG28451731CAAGTCGCTCTGAGACGTCAGAAAGAGATTTGAGATTGCACTGGATCAAG
Malus domestica genome assembly, chromosome: 1.
OU744542.1:32191353-32191372
GATCAATTGGCTCAGTTTGGTCCTGTACCG32191353CAAGTCGCTCTGAGACGTCAGAAAGAGATTTGAGATTGCACTGGATCAAG
Malus domestica genome assembly, chromosome: 1.
OU744953.1:31787755-31787774
GATCAATTGGCTCAGTTTGGTCCTGTACCG31787755CAAGTCGCTCTGAGACGTCAGAAAGAGATTTGAGATTGCACTGGATCAAG
Malus domestica genome assembly, chromosome: 1.
OU744991.1:28703349-28703368
GATCAATTGGCTCAGTTTGGTCCTGTACCG28703349CAAGTCGCTCTGAGACGTCAGAAAGAGATTTGAGATTGCACTGGATCAAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGACGTCTCAGAGCGACTTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGACGTCTCAGAGCGACTTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.721 | 0.712 | search_plus_done; http://172.18.8.135:50400/match?q=TGACGTCTCAGAGCGACTTG&k=0&no_gap=0&offset=0&limit=50
0.977 | 0.256 | search_minus_done; http://172.18.8.135:50400/match?q=CAAGTCGCTCTGAGACGTCA&k=0&no_gap=0&offset=0&limit=36
0.986 | 0.009 | cgi_end;

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