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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 19:59:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RS3AR74JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EW737678.1:134-153
AAGGATTCACTTGACTGACATTTAAGAACA134TGAGAAAAGGAAAACGCTGGCTGGGGGGCTGAGCTGAGCACGAGACTTGT
RS2FI04JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD574683.1:117-136
AAGGATTCACTTGACTGACATTTAAGAACA117TGAGAAAAGGAAAACGCTGGCTGGGGGGCTGAGCTGAGCACGAGACTTGT
RS3GT95JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
FD952977.1:145-164
AAGGATTCACTTGACTGACATTTAAGAACA145TGAGAAAAGGAAAACGCTGGCTGGGGGGCTGAGCTGAGCACGAGACTTGT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_4233.
FX785046.1:78-97
ATAAAGGATTCACTTTGACATTCAAGAACA78TGAGAAAAGGAAAACGCTGGCTGAGCAGAGCAGAGCAGAGCAAGAGACTT
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:42966433-42966452
ATAAAGGATTCACTTTGACATTCAAGAACA42966433TGAGAAAAGGAAAACGCTGGCAGAGCAAGAGACTTGGTGTTACTACTCTT
Sequence 2727 from patent US 10858665.
MX131079.1:801-820
AAGTCTCTTGCTCTGCTCTGCTCTGCTCAG801CCAGCGTTTTCCTTTTCTCATGTTCTTGAATGTCAAAGTGAATCCTTTAT
Sequence 2727 from patent US 11485982.
OO833464.1:801-820
AAGTCTCTTGCTCTGCTCTGCTCTGCTCAG801CCAGCGTTTTCCTTTTCTCATGTTCTTGAATGTCAAAGTGAATCCTTTAT
Sequence 2727 from patent US 11512323.
OO917166.1:801-820
AAGTCTCTTGCTCTGCTCTGCTCTGCTCAG801CCAGCGTTTTCCTTTTCTCATGTTCTTGAATGTCAAAGTGAATCCTTTAT
BNSCS3CT_UP_008_D12_08JAN2005_090 Brassica napus seed coat BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EE465570.1:688-707
AAGTCTCTTGCTCTGCTCTGCTCTGCTCAG688CCAGCGTTTTCCTTTTCTCATNGTCTTGAAATGTC
37RDBRH_UP_064_B11_05DEC2005_093 Brassica rapa 37RDBRH Brassica rapa cDNA 5', mRNA sequence.
EE526941.1:368-387
CTCAGCTCTGCTCTGCTCTGCTCTGCTCAG368CCAGCGTTTTCCTTTTCTCATGTTCTTGAATGTCAAAGTGAATCCTTTAT
BNQA_UP_054_A10_03OCT2003_080 Brassica napus BNQA Brassica napus cDNA 5', mRNA sequence.
EE551500.1:272-291
AAGTCTCTTGCTCTGCTCTGCTCTGCTCAG272CCAGCGTTTTCCTTTTCTCATGTTCTTGAATGTCAAAGTGAATCCTTTAT
65JKBNM0_T3_005_A11_16MAR2005_095 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL587053.1:722-741
AAGTCTCTTGCTCTGCTCTGCTCTGCTCAG722CCAGCGTTTTCCTTTTCTCATGTTCTTGAATGTCAAAGTGAATCCTTTAT
BNAEN3GH_UP_002_A06_31MAY2006_048 Brassica napus BNAEN3GH Brassica napus cDNA 5', mRNA sequence.
ES992879.1:367-386
AAGTCTCTTGCTCTGCTCTGCTCTGCTCAG367CCAGCGTTTTCCTTTTCTCATGTTCTTGAATGTCAAAGTGAATCCTTTAT
BR073547 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-026C06 5', mRNA sequence.
EX087257.1:828-847
AAGTCTCTTGCTCTGCTCTGCTCTGCTCAG828CCAGCGTTTTCCTTTTCTCATGTTCTTGAATGTCAAAGTGAATCCTTTAT
RS2G080TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD572312.1:496-515
ACAAGTCTCGTGCTCAGCTCAGCCCCCCAG496CCAGCGTTTTCCTTTTCTCATGTTCTTAAATGTCAGTCAAGTGAATCCTT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_25270.
FX724570.1:228-247
AAGTCTCTTGCTCTGCTCTGCTCTGCTCAG228CCAGCGTTTTCCTTTTCTCATGTTCTTGAATGTCAAAGTGAATCCTTTAT
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:16760939-16760958
AAGTCTCTTGCTCTGCTCTGCTCTGCTCAG16760939CCAGCGTTTTCCTTTTCTCATGTTCTTGAATGTCAAAGTGAATCCTTTAT
Brassica napus genome assembly, chromosome: A09.
HG994363.1:16266224-16266243
GAGTAGTAGTAACACAAGTCTCTTGCTCAG16266224CCAGCGTTTTCCTTTTCTCATGTGCTTGAAAGTCGAAGTGAATCCTTTAT
Brassica napus genome assembly, chromosome: C09.
HG994373.1:25878461-25878480
AAGAGTAGTAACACCAAGTCTCTTGCTCAG25878461CCAGCGTTTTCCTTTTCTCATGTTCTTGAATGTCAAAGTGAATCCTTTAT
Brassica rapa genome, scaffold: A09.
LR031568.1:16418235-16418254
AAGTCTCTTGCTCTGCTCTGCTCTGCTCAG16418235CCAGCGTTTTCCTTTTCTCATGTTCTTGAATGTCAAAGTGAATCCTTTAT
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:25761008-25761027
AAGAGTAGTAACACCAAGTCTCTTGCTCAG25761008CCAGCGTTTTCCTTTTCTCATGTTCTTGAATGTCAAAGTGAATCCTTTAT
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:16744975-16744994
AAGTCTCTTGCTCTGCTCTGCTCTGCTCAG16744975CCAGCGTTTTCCTTTTCTCATGTTCTTGAATGTCAAAGTGAATCCTTTAT
Cordylochernes scorpioides isolate IN4F17 chromosome 03.
CP092865.1:156325570-156325589
GTTGAACTCTTTAAAAAAAACTTTCCTTTG156325570CCAGCGTTTTCCTTTTCTCAAGGATTTCTTCTCCGATCTGAAATTCTTGA
Metellina segmentata genome assembly, chromosome: 8.
OX375880.1:104380609-104380628
GAACTGTCCGAAATCCAGACGTTTTGCCAA104380609CCAGCGTTTTCCTTTTCTCACTTTTTTACATTTTCCGACAATTTTTAAAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGAGAAAAGGAAAACGCTGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAGAAAAGGAAAACGCTGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.395 | 0.386 | search_plus_done; http://172.18.8.135:50400/match?q=TGAGAAAAGGAAAACGCTGG&k=0&no_gap=0&offset=0&limit=50
1.245 | 0.850 | search_minus_done; http://172.18.8.135:50400/match?q=CCAGCGTTTTCCTTTTCTCA&k=0&no_gap=0&offset=0&limit=45
1.257 | 0.012 | cgi_end;

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