GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 06:40:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KR 1020230025024-A/14: FERMENTED BEVERAGE COMPOSITION.
PE382494.1:713686-713705
AAATCTTTCTTTTCTAAAACAACGAAAATA713686TGAGAACCTGTGATGGTTTGACGTACAGATGATGCATCAATTTCTTTGAA
Rattus norvegicus clone CH230-7L12, WORKING DRAFT SEQUENCE, 2 unordered pieces.
AC095490.6:133776-133795
GACCTTGATTTAAATGTACTGACCTCAGGG133776TGAGAACCTGTGATGGTTTGCATATGCTTGGCCCAGGGAGTGGCACTATT
Vitis vinifera contig VV78X253283.6, whole genome shotgun sequence.
AM448076.2:10129-10148
ACCGTGTTATTCAAGCCAAGGTTTCTAGAA10129TGAGAACCTGTGATGGTTTGAGCCAACTGTTTTAACCTTGGAAGCGAGGG
Pichia kluyveri isolate APC 11.10 B chromosome 3.
CP125795.1:835644-835663
AAATCTTTCTTTTCTAAAACAACGAAAATA835644TGAGAACCTGTGATGGTTTGACGTACAGATGATGCATCAATTTCTTTGAA
Vitis vinifera cv. PN40024, annotated scaffold_40.assembly12x.
FN596008.1:2779390-2779409
ACCGTGTTATTCAAGCCAAGGTTTCTAGAA2779390TGAGAACCTGTGATGGTTTGAGCCAACTGTTTTAACCTTGGAAGCGAGGG
Theobroma cacao genome assembly, chromosome: V.
LT594792.1:17623807-17623826
ATATTGTTGTTCAGGCCAAGGTTTCTTGAA17623807TGAGAACCTGTGATGGTTTGAGCTAGTTGCTTCAATCTTGGCATTGAAGG
Balaenoptera acutorostrata genome assembly, chromosome: 2.
OX465351.1:94826846-94826865
TTTTTGTATAGTTAGAGCTCCAGCCCATGG94826846CAAACCATCACAGGTTCTCATTAGATCATTATTATGTTAATTGTACATTT
KR 1020230025024-A/3: FERMENTED BEVERAGE COMPOSITION.
PE382483.1:783811-783830
TTCAAAGAAATTGATGCATCATCTGTACGT783811CAAACCATCACAGGTTCTCATATTTTCGTTGTTTTAGAAAAGAAAGATTT
CAbud0006_IIIF_A05 Vitis vinifera cv. cabernet sauvignon (Clone 8) Bud - CABUD Vitis vinifera cDNA clone CAbud0006_IIIF_A05 5', mRNA sequence.
CF514304.1:494-513
CCCTCGCTTCCAAGGTTAAAACAGTTGGCT494CAAACCATCACAGGTTCTCATTCTAGAAACCTTGGCTTGAATAACACGGT
Theobroma cacao, mRNA sequence (KZ0AAK8YE16FM1).
CU533342.1:539-558
CCTTCAATGCCAAGATTGAAGCAACTAGCT539CAAACCATCACAGGTTCTCATTCAAGAAACCTTGGCCTGAACAACAATAT
TSA: Cannabis sativa PK24930.1_1.CasaPuKu mRNA sequence.
JP449928.1:1117-1136
AATACAAATCAGAGGATGAAGCAACTGGCT1117CAAACCATCACAGGTTCTCACTCAAAAAACCTTGGTCTAAACAATACTGT
TSA: Vitis vinifera Locus_5361_Transcript_4/9_Confidence_0.481.Vivi mRNA sequence.
KA168497.1:879-898
CCCTCGCTTCCAAGGTTAAAACAGTTGGCT879CAAACCATCACAGGTTCTCATTCTAGAAACCTTGGCTTGAATAACACGGT
TSA: Vitis vinifera Locus_5361_Transcript_6/9_Confidence_0.630.Vivi mRNA sequence.
KA168498.1:992-1011
CCCTCGCTTCCAAGGTTAAAACAGTTGGCT992CAAACCATCACAGGTTCTCATTCTAGAAACCTTGGCTTGAATAACACGGT
TSA: Vitis vinifera Locus_5361_Transcript_9/9_Confidence_0.556.Vivi mRNA sequence.
KA168499.1:992-1011
CCCTCGCTTCCAAGGTTAAAACAGTTGGCT992CAAACCATCACAGGTTCTCATTCTAGAAACCTTGGCTTGAATAACACGGT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp280870_c1_seq1.
LA397581.1:1049-1068
AATACAAATCAGAGGATGAAGCAACTGGCT1049CAAACCATCACAGGTTCTCACTCAAAAAACCTTGGTCTAAACAACTCTGT
TSA: Humulus lupulus var. lupulus mRNA, contig: comp280870_c1_seq3.
LA397583.1:1211-1230
AATACAAATCAGAGGATGAAGCAACTGGCT1211CAAACCATCACAGGTTCTCACTCAAAAAACCTTGGTCTAAACAACTCTGT
Vitis rotundifolia cultivar Noble chromosome 8.
CP092933.1:9677192-9677211
CCCTTGCTTCCAAGGTTAAAACAGTTGGCT9677192CAAACCATCACAGGTTCTCATTCTAGAAACCTTGGCTTGAATAACACGGT
Gossypium rotundifolium isolate GPK201 chromosome 11.
CP106732.1:1361469-1361488
CCATCAACGCCAAGATTAAAGCAACTAGCT1361469CAAACCATCACAGGTTCTCATTCGAAAAACCTTGGCCTAAACCACACTGT
Vitis vinifera cultivar Pinot Noir 40024 chromosome 8.
CP126655.1:12751416-12751435
CCCTCGCTTCCAAGGTTAAAACAGTTGGCT12751416CAAACCATCACAGGTTCTCATTCTAGAAACCTTGGCTTGAATAACACGGT
Vitis x doaniana cultivar PI 588149 chromosome 8.
CP128334.1:12955583-12955602
CCCTCGCTTCCAAGGTTAAAACAGTTGGCT12955583CAAACCATCACAGGTTCTCATTCTAGAAACCTTGGCTTGAATAACACGGT
Vitis x doaniana cultivar PI 588149 chromosome 8.
CP128353.1:12620674-12620693
CCCTCGCTTCCAAGGTTAAAACAGTTGGCT12620674CAAACCATCACAGGTTCTCATTCTAGAAACCTTGGCTTGAATAACACGGT
Theobroma cacao genome assembly, chromosome: 5.
OY284442.1:22725367-22725386
CCTTCAATGCCAAGATTGAAGCAACTAGCT22725367CAAACCATCACAGGTTCTCATTCAAGAAACCTTGGCCTGAACAACAATAT
Theobroma cacao genome assembly, chromosome: 5.
OY284462.1:22551528-22551547
CCTTCAATGCCAAGATTGAAGCAACTAGCT22551528CAAACCATCACAGGTTCTCATTCAAGAAACCTTGGCCTGAACAACAATAT
Humulus lupulus genome assembly, chromosome: 3.
OY720649.1:163597647-163597666
AATACAAATCAGAGGATGAAGCAACTGGCT163597647CAAACCATCACAGGTTCTCACTCAAAAAACCTTGGTCTAAACAACTCTGT
Erodium maritimum genome assembly, chromosome: 1.
OY997588.1:90958651-90958670
CCTTCAACAAGAAGGTTAAAACAGCTGGCT90958651CAAACCATCACAGGTTCTCACTCAAAAAACCTTGGCCTTAATAACACCGT
Octopus vulgaris genome assembly, chromosome: 9.
OX597822.1:59889667-59889686
TGCTTAACTGTTAGGTTACAGGGATGTAAA59889667CAAACCATCACAGGTTCTCAGACAGTGTGGTTGGGTGGAGTAGATGAAGA
Octopus vulgaris genome assembly, chromosome: 9.
OX597822.1:60041806-60041825
TGCTTAACTGTTAGGTTACAGGGATGTAAA60041806CAAACCATCACAGGTTCTCAGACAGTGTGGTTGGGTGGAGTAGATGAAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGAGAACCTGTGATGGTTTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAGAACCTGTGATGGTTTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.191 | 0.183 | search_plus_done; http://172.18.8.135:50400/match?q=TGAGAACCTGTGATGGTTTG&k=0&no_gap=0&offset=0&limit=50
0.460 | 0.269 | search_minus_done; http://172.18.8.135:50400/match?q=CAAACCATCACAGGTTCTCA&k=0&no_gap=0&offset=0&limit=44
0.474 | 0.013 | cgi_end;

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