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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 15:49:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sparus aurata genome assembly, chromosome: 24.
LR537144.1:19528978-19528997
GGTGCTGTCTGCAGAGACCGCTTGTTCCCC19528978TGAGAAGATCTGCAGTGGAACATTCTGAGGTTAACTCTGGTCAGCAAACC
MAG: Nitrospiraceae bacterium isolate bin97 chromosome.
CP070632.1:3077076-3077095
TAAATTATATCAAGGACAATGAATACTGGG3077076TGAGAAGATCTGCAGTGGAAGCACTGGGCATGCTCCATGCAGAGGACTAC
Gossypium turneri isolate D10-2 chromosome D10_01.
CP032571.1:37574327-37574346
AGGAATCAGGCTGAGGAGTCTCGGACCAAG37574327TGAGAAGATCTGCAGTGGAAGTGTGTGGTTTCCTCACTGGAGTACTCCTC
Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:58128113-58128132
AGGAATCAGGTTGAGGAGTCTCGGACCAAG58128113TGAGAAGATCTGCAGTGGAAGTGTGTGGTTTCCTCACTGGAGTACTCCTC
Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:67282964-67282983
AGGAATCAGGTGGAGGAGTCTCGGACCAAG67282964TGAGAAGATCTGCAGTGGAAGTGTGTGGTTTCCTCACTGGAGTACTCCTC
Hibiscus tridactylites genome assembly, chromosome: 1.
OY288265.1:77337817-77337836
AGGAATCGGATTGAGGAGAGTCGGACCAGG77337817TGAGAAGATCTGCAGTGGAAGTGTGTGGTTTCCTCACAGGAGTGCTTCTC
BNLGHi6958 Six-day Cotton fiber Gossypium hirsutum cDNA 5', mRNA sequence.
AW186906.1:175-194
GAGGAGTACTCCAGTGAGGAAACCACACAC175TTCCACTGCAGATCTTCTCACTTGGTCCGAGACTCCTCAACCTGATTCCT
BNLGHi6960 Six-day Cotton fiber Gossypium hirsutum cDNA 5', mRNA sequence.
AW186907.1:416-435
GAGGAGTACTCCAGTGAGGAAACCACACAC416TTCCACTGCAGATCTTCTCACTTGGTCCGAGACTCCTCAACCTGATTCCT
BNLGHi6941 Six-day Cotton fiber Gossypium hirsutum cDNA 5', mRNA sequence.
AW187848.1:28-47
GAGTACTCCAGTGAGGAAACCACACAC28TTCCACTGCAGATCTTCTCACTTGGTCCGAGACTCCTCAACCTGATTCCT
GA__Eb0008J21f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0008J21f, mRNA sequence.
BF270593.1:322-341
GAGGAGTACTCCAGTGAGGAAACCACACAC322TTCCACTGCAGATCTTCTCACTTGGTCCGAGACTCCTCAACCTGATTCCT
GA__Ea0017B02r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0017B02r, mRNA sequence.
BM359143.1:141-160
GAGGAGTACTCCAGTGAGGAAACCACACAC141TTCCACTGCAGATCTTCTCACTTGGTCCGAGACTCCTCAACCTGATTCCT
GR__Eb0032K13.r GR__Eb Gossypium raimondii cDNA clone GR__Eb0032K13 3', mRNA sequence.
CO103859.1:144-163
GAGGAGTACTCCAGTGAGGAAACCACACAC144TTCCACTGCAGATCTTCTCACTTGGTCCGAGACTCCTCAACCTGATTCCT
GR__Eb0041N10.r GR__Eb Gossypium raimondii cDNA clone GR__Eb0041N10 3', mRNA sequence.
CO109435.1:103-122
GAGGAGTACTCCAGTGAGGAAACCACACAC103TTCCACTGCAGATCTTCTCACTTGGTCCGAGACTCCTCAACCTGATTCCT
GR__Eb0046G06.r GR__Eb Gossypium raimondii cDNA clone GR__Eb0046G06 3', mRNA sequence.
CO110761.1:183-202
GAGGAGTACTCCAGTGAGGAAACCACACAC183TTCCACTGCAGATCTTCTCACTTGGTCCGAGACTCCTCAACCTGATTCCT
GR__Eb0048P18.r GR__Eb Gossypium raimondii cDNA clone GR__Eb0048P18 3', mRNA sequence.
CO112365.1:151-170
GAGGAGTACTCCAGTGAGGAAACCACACAC151TTCCACTGCAGATCTTCTCACTTGGTCCGAGACTCCTCAACCTGATTCCT
CM007H10 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
DR452937.1:95-114
GAGGAGTACTCCAGTGAGGAAACCACACAC95TTCCACTGCAGATCTTCTCACTTGGTCCGAGACTCCTCAACCTGATTCCT
EST1054153 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT543513.1:28-47
GAGTACTCCAGTGAGGAAACCACACAC28TTCCACTGCAGATCTTCTCACTTGGTCCGAGACTCCTCAACCTGATTCCT
EST1058467 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT547827.1:261-280
GAGGAGTACTCCAGTGAGGAAACCACACAC261TTCCACTGCAGATCTTCTCACTTGGTCCGAGACTCCTCAACCTGATTCCT
EST1058642 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT548002.1:167-186
GAGGAGTACTCCAGTGAGGAAACCACACAC167TTCCACTGCAGATCTTCTCACTTGGTCCGAGACTCCTCAACCTGATTCCT
EST1063256 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT552616.1:134-153
GAGGAGTACTCCAGTGAGGAAACCACACAC134TTCCACTGCAGATCTTCTCACTTGGTCCGAGACTCCTCAACCTGATTCCT
EST1075065 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT564425.1:120-139
GAGGAGTACTCCAGTGAGGAAACCACACAC120TTCCACTGCAGATCTTCTCACTTGGTCCGAGACTCCTCAACCTGATTCCT
EST1077300 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT566660.1:120-139
GAGGAGTACTCCAGTGAGGAAACCACACAC120TTCCACTGCAGATCTTCTCACTTGGTCCGAGACTCCTCAACCTGATTCCT
EST1080431 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT569791.1:148-167
GAGGAGTACTCCAGTGAGGAAACCACACAC148TTCCACTGCAGATCTTCTCACTTGGTCCGAGACTCCTCAACCTGATTCCT
EST1080504 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT569864.1:390-409
GAGGAGTACTCCAGTGAGGAAACCACACAC390TTCCACTGCAGATCTTCTCACTTGGTCCGAGACTCCTCAACCTGATTCCT
EST1080709 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT570069.1:81-100
GAGGAGTACTCCAGTGAGGAAACCACACAC81TTCCACTGCAGATCTTCTCACTTGGTCCGAGACTCCTCAACCTGATTCCT
UFL_301_87 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES828807.1:99-118
GAGGAGTACTCCAGTGAGGAAACCACACAC99TTCCACTGCAGATCTTCTCACTTGGTCCGAGACTCCTCAACCTGATTCCT
UFL_398_25 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES832779.1:105-124
GAGGAGTACTCCAGTGAGGAAACCACACAC105TTCCACTGCAGATCTTCTCACTTGGTCCGAGACTCCTCAACCTGATTCCT
UFL_033_92 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES837597.1:319-338
GAGGAGTACTCCAGTGAGGAAACCACACAC319TTCCACTGCAGATCTTCTCACTTGGTCCGAGACTCCTCAACCTGATTCCT
sg001G11 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV494182.1:60-79
AGAGGAGTACTCCAGTGAGGAAACACACAC60TTCCACTGCAGATCTTCTCACTTGGTCCGAGACTCCTCAACCTGATTCCT
Gossypioides kirkii chromosome KI_01.
CP032244.1:12916667-12916686
GAGGAGTACTCCAGTGAGGAAGCCACACAC12916667TTCCACTGCAGATCTTCTCACTTGGTCCGAGACTCCTCAAACTGATTCCT
Gossypium raimondii isolate D5-4 chromosome D5_01.
CP032553.1:22635062-22635081
GAGGAGTACTCCAGTGAGGAAACCACACAC22635062TTCCACTGCAGATCTTCTCACTTGGTCCGAGACTCCTCAACCTGATTCCT
Gossypium herbaceum isolate GPA1alz chromosome 1.
CP106699.1:67663824-67663843
GAGGAGTACTCCAGTGAGGAAACCACACAC67663824TTCCACTGCAGATCTTCTCACTTGGTCCGAGACTCCTCAACCTGATTCCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGAGAAGATCTGCAGTGGAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAGAAGATCTGCAGTGGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.174 | 0.165 | search_plus_done; http://172.18.8.135:50400/match?q=TGAGAAGATCTGCAGTGGAA&k=0&no_gap=0&offset=0&limit=50
1.129 | 0.956 | search_minus_done; http://172.18.8.135:50400/match?q=TTCCACTGCAGATCTTCTCA&k=0&no_gap=0&offset=0&limit=44
1.147 | 0.017 | cgi_end;

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