GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-10 02:20:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

EST986736 FvF Fusarium verticillioides cDNA clone FVFIP55, mRNA sequence.
DR596608.1:599-618
TCGCCATTGGGCTCGGGTGTGCCAGTGGCC599TGAGAAGCAGCCTCTCGTTGCATGCGGGCCTCGATCTCTCGGAGCTGGGA
EST1040632 FvN Fusarium verticillioides cDNA clone FVNAU07, mRNA sequence.
DR650515.1:601-620
TCGCCATTGGGCTCGGGTGTGCCAGTGGCC601TGAGAAGCAGCCTCTCGTTGCATGCGGGCCTCGATCTCTCGGAGCTGGGA
EST1070152 FvO Fusarium verticillioides cDNA clone FVOD194, mRNA sequence.
DR680035.1:616-635
TCGCCATTGGGCTCGGGTGTGCCAGTGGCC616TGAGAAGCAGCCTCTCGTTGCATGCGGGCCTCGATCTCTCGGAGCTGGGA
EST1070873 FvO Fusarium verticillioides cDNA clone FVODK82, mRNA sequence.
DR680756.1:603-622
TCGCCATTGGGCTCGGGTGTGCCAGTGGCC603TGAGAAGCAGCCTCTCGTTGCATGCGGGCCTCGATCTCTCGGAGCTGGGA
EST1070874 FvO Fusarium verticillioides cDNA clone FVODK82, mRNA sequence.
DR680757.1:603-622
TCGCCATTGGGCTCGGGTGTGCCAGTGGCC603TGAGAAGCAGCCTCTCGTTGCATGCGGGCCTCGATCTCTCGGAGCTGGGA
Fusarium oxysporum f. sp. koae isolate 44 chromosome 2.
CP052898.1:1335377-1335396
TCGCCATTGGGCTCAGGTGTGCCAGTGGCC1335377TGAGAAGCAGCCTCTCGTTGCATGCGGGCCTCGATCTCTCGGAGCTGGGA
Fusarium verticillioides isolate ITEM 10027 chromosome 3.
CP079906.1:1413038-1413057
TCGCCATTGGGCTCGGGTGTGCCAGTGGCC1413038TGAGAAGCAGCCTCTCGTTGCATGCGGGCCTCGATCTCTCGGAGCTGGGA
Fusarium avenaceum strain WV21P1A chromosome 5.
CP109666.1:1348631-1348650
TCGCCATTGGGCTCGGGTGTGGCAGCAGCA1348631TGAGAAGCAGCCTCTCGTTGCATACGGGCCTCGATCTCGCGGAGCTGGGA
Fusarium oxysporum f. sp. cubense strain race 4 chromosome 2.
CP115876.1:1665887-1665906
TCGCCATTGGGCTCAGGTGTGCCAGTGGCC1665887TGAGAAGCAGCCTCTCGTTGCATGCGGGCCTCGATCTCTCGGAGCTGGGA
Fusarium oxysporum strain Fo5176 chromosome 5.
CP128294.1:1397438-1397457
TCGCCATTGGGCTCAGGTGTGCCAGTGGCC1397438TGAGAAGCAGCCTCTCGTTGCATGCGGGCCTCGATCTCTCGGAGCTGGGA
EST1003476 FvH Fusarium verticillioides cDNA clone FVHAS71, mRNA sequence.
DR613348.1:361-380
TCCCAGCTCCGAGAGATCGAGGCCCGCATG361CAACGAGAGGCTGCTTCTCAGGCCACTGGCACACCCGAGCCCAATGGCGA
EST1009515 FvH Fusarium verticillioides cDNA clone FVHDQ84, mRNA sequence.
DR619387.1:381-400
TCCCAGCTCCGAGAGATCGAGGCCCGCATG381CAACGAGAGGCTGCTTCTCAGGCCACTGGCACACCCGAGCCCAATGGCGA
EST1017949 FvI Fusarium verticillioides cDNA clone FVICJ07, mRNA sequence.
DR627821.1:79-98
TCCCAGCTCCGAGAGATCGAGGCCCGCATG79CAACGAGAGGCTGCTTCTCAGGCCACTGGCACACCCGAGCCCAATGGCGA
EST1040631 FvN Fusarium verticillioides cDNA clone FVNAU07, mRNA sequence.
DR650514.1:461-480
TCCCAGCTCCGAGAGATCGAGGCCCGCATG461CAACGAGAGGCTGCTTCTCAGGCCACTGGCACACCCGAGCCCAATGGCGA
EST1068961 FvO Fusarium verticillioides cDNA clone FVOCT94, mRNA sequence.
DR678844.1:281-300
TCCCAGCTCCGAGAGATCGAGGCCCGCATG281CAACGAGAGGCTGCTTCTCAGGCCACTGGCACACCCGAGCCCAATGGCGA
TSA: Soil metagenome mRNA, contig: MTC02038.
FX002038.1:217-236
TCCCAGCTCCGCGAGATCGAGGCCCGTATG217CAACGAGAGGCTGCTTCTCATGCTGCTGCCACACCCGAGCCCAATGGCGA
Fusarium fujikuroi strain CSV1 chromosome II.
CP023078.1:3582127-3582146
TCCCAGCTCCGAGAGATCGAGGCCCGCATG3582127CAACGAGAGGCTGCTTCTCAGGCCACTGGCACACCCGAGCCCAATGGTGA
Fusarium fujikuroi strain Augusto2 chromosome II.
CP023090.1:3571372-3571391
TCCCAGCTCCGAGAGATCGAGGCCCGCATG3571372CAACGAGAGGCTGCTTCTCAGGCCACTGGCACACCCGAGCCCAATGGTGA
Fusarium fujikuroi strain I1.3 chromosome II.
CP023102.1:3628106-3628125
TCCCAGCTCCGAGAGATCGAGGCCCGCATG3628106CAACGAGAGGCTGCTTCTCAGGCCACTGGCACACCCGAGCCCAATGGTGA
Fusarium oxysporum Fo47 chromosome IV.
CP052041.1:3333672-3333691
TCCCAGCTCCGAGAGATCGAGGCCCGCATG3333672CAACGAGAGGCTGCTTCTCAGGCCACTGGCACACCTGAGCCCAATGGCGA
Fusarium verticillioides strain 7600 chromosome 2.
CP114042.1:3360502-3360521
TCCCAGCTCCGAGAGATCGAGGCCCGCATG3360502CAACGAGAGGCTGCTTCTCAGGCCACTGGCACACCCGAGCCCAATGGCGA
Fusarium proliferatum strain NRRL62905 chromosome 2.
CP128301.1:3375473-3375492
TCCCAGCTCCGAGAGATCGAGGCCCGCATG3375473CAACGAGAGGCTGCTTCTCAGGCCACTGGCACACCCGAGCCTAATGGCGA
Fusarium oxysporum f. sp. vasinfectum isolate ME23 chromosome 5.
CP130301.1:3458128-3458147
TCCCAGCTCCGAGAGATCGAGGCCCGCATG3458128CAACGAGAGGCTGCTTCTCAGGCCACTGGCACACCTGAGCCCAATGGCGA
Fusarium fujikuroi IMI 58289 draft genome, chromosome FFUJ_chr02.
HF679024.1:3593648-3593667
TCCCAGCTCCGAGAGATCGAGGCCCGCATG3593648CAACGAGAGGCTGCTTCTCAGGCCACTGGCACACCCGAGCCCAATGGTGA
Scoparia ambigualis genome assembly, chromosome: 17.
OY992518.1:23820385-23820404
CGTGTCTATTCCCGTATATAGATCTATGGT23820385CAACGAGAGGCTGCTTCTCATACTGTTTGTGCTCTTCGTCATAAATGTAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).