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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 14:14:59, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Gossypioides kirkii chromosome KI_06.
CP032248.1:43175576-43175595
AACAATGACTTGCTTTCTTGGATAACTCTC43175576TGAGCAATAACAGGCTGAGAAGGGCCAAAAAAGGATCCAAAGCTGCACGA
Gossypium raimondii isolate D5-4 chromosome D5_02.
CP032554.1:3579549-3579568
AACAATGACTTGCTTTCTTGGATAACTCTC3579549TGAGCAATAACAGGCTGAGAAGGGCCAAAAAAGGATCCAAAGCTGCAGGA
Gossypium turneri isolate D10-2 chromosome D10_02.
CP032572.1:3415097-3415116
AACAATGACTTGCTTTCTTGGATAACTCTC3415097TGAGCAATAACAGGCTGAGAAGGGCCAAAAAAGGATCCAAAGCTGCAGGA
Gossypium herbaceum isolate GPA1alz chromosome 2.
CP106707.1:4216895-4216914
AACAATGACTTGCTTTCTTGGATAACTCTC4216895TGAGCAATAACAGGCTGAGAAGGACCAAAAAAGGATCCAAAGCTGCAGGA
Alsophila aescularia genome assembly, chromosome: 12.
OX276385.1:13660312-13660331
GACGTATGAAACAGGGAAAATTCTCAGCAG13660312TGAGCAATAACAGGCTGAGATGATAGAGCGAAAAAAAAGCGATCTCTATC
coau0002K22 Cotton Boll Abscission Zone cDNA Library Gossypium hirsutum cDNA clone coau0002K22 5', mRNA sequence.
AI054978.1:229-248
TACAATAACTTTGGATCCTTTTTTGGCCCT229TCTCAGCCTGTTATTGCTCAGAGAGTTATCCAAGAAAGCAAGTCATTGTT
BNLGHi6905 Six-day Cotton fiber Gossypium hirsutum cDNA 5', mRNA sequence.
AW186902.1:323-342
TACAATAACTTTGGATCCTTTTTTGGTCCT323TCTCAGCCTGTTATTGCTCAGAGAGTTATCCAAGAAAGCAAGTCATTGTT
GR__Eb12B18.f GR__Eb Gossypium raimondii cDNA clone GR__Eb12B18 5', mRNA sequence.
CO127501.1:320-339
TACAATAACTTTGGATCCTTTTTTGGCCCT320TCTCAGCCTGTTATTGCTCAGAGAGTTATCCAAGAAAGCAAGTCATTGTT
GH_ON40B16.r GH_ON Gossypium hirsutum cDNA clone GH_ON40B16 3', mRNA sequence.
DT460940.1:580-599
TACAATAACTTTGGATCCTTTTTTGGCCCT580TCTCAGCCTGTTATTGCTCAGAGAGTTATCCAAGAAAGCAAGTCATTGTT
GH_CHX14O15.r GH_CHX Gossypium hirsutum cDNA clone GH_CHX14O15 3', mRNA sequence.
DT464057.1:605-624
TACAATAACTTTGGATCCTTTTTTGGTCCT605TCTCAGCCTGTTATTGCTCAGAGAGTTATCCAAGAAAGCAAGTCATTGTT
EST1058630 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT547990.1:565-584
TACAATAACTTTGGATCCTTTTTTGGTCCT565TCTCAGCCTGTTATTGCTCAGAGAGTTATCCAAGAAAGCAAGTCATTGTT
EST1077582 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT566942.1:563-582
TACAATAACTTTGGATCCTTTTTTGGCCCT563TCTCAGCCTGTTATTGCTCAGAGAGTTATCCAAGAAAGCAAGTCATTGTT
EST1080539 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT569899.1:477-496
TACAATAACTTTGGATCCTTTTTTGGTCCT477TCTCAGCCTGTTATTGCTCAGAGAGTTATCCAAGAAAGCAAGTCATTGTT
UFL_394_63 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES825617.1:593-612
TACAATAACTTTGGATCCTTTTTTGGCCCT593TCTCAGCCTGTTATTGCTCAGAGAGTTATCCAAGAAAGCAAGTCATTGTT
UFL_211_94 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES829225.1:588-607
TACAATAACTTTGGATCCTTTTTTGGTCCT588TCTCAGCCTGTTATTGCTCAGAGAGTTATCCAAGAAAGCAAGTCATTGTT
UFL_391_55 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES831382.1:596-615
TACAATAACTTTGGATCCTTTTTTGGNCCT596TCTCAGCCTGTTATTGCTCAGAGAGTTATCCAGAAAAGCAGTCATTGTTG
EST004092 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 16-H13 5', mRNA sequence.
GR710892.1:256-275
TACAATAACTTTGGATCCTTTTTTGGTCCT256TCTCAGCCTGTTATTGCTCAGAGAGTTATCCAAGAAAGCAAGTCATTGTT
GFLSC1NG-T3-003_I24_19APR2009_088 GFLSC1NG cell culture from Glaucium flavum Glaucium flavum cDNA, mRNA sequence.
JG615747.1:626-645
AATGACAAGTTTGGATCTTTCTTTGGTCCT626TCTCAGCCTGTTATTGCTCAAAGAGTAATCCAAGAAAGCAAGTCATTGCT
Gossypium herbaceum isolate Zhongcao1 chromosome 2.
CP106694.1:90597783-90597802
TCCTGCAGCTTTGGATCCTTTTTTGGTCCT90597783TCTCAGCCTGTTATTGCTCAGAGAGTTATCCAAGAAAGCAAGTCATTGTT
Gossypium bickii isolate GPG1lz chromosome 2.
CP106718.1:103329108-103329127
TCCTGCAGCTTTGGATCCTTTTTTGGCCCT103329108TCTCAGCCTGTTATTGCTCAGAGAGTTATCCAAGAAAGCAAGTCATTGTT
Gossypium rotundifolium isolate GPK201 chromosome 2.
CP106723.1:134436907-134436926
TCTTGCAGCTTTGGATCCTTTTTTGGCCCT134436907TCTCAGCCTGTTATTGCTCAGAGAGTTATCCAAGAAAGCAAGTCATTGTT
Chryseobacterium sp. G0201 chromosome, complete genome.
CP033917.1:3593003-3593022
GCTAATACATTTAGAATTCAGAATTCTTCT3593003TCTCAGCCTGTTATTGCTCACAACTATTCATTTATTACTTTACCGAGGTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGAGCAATAACAGGCTGAGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAGCAATAACAGGCTGAGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.329 | 0.320 | search_plus_done; http://172.18.8.135:50400/match?q=TGAGCAATAACAGGCTGAGA&k=0&no_gap=0&offset=0&limit=50
1.111 | 0.781 | search_minus_done; http://172.18.8.135:50400/match?q=TCTCAGCCTGTTATTGCTCA&k=0&no_gap=0&offset=0&limit=45
1.122 | 0.012 | cgi_end;

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