GGGenome | Results

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Pyrus pyrifolia mRNA, clone: NFR1_02_05, 3' end sequence, expressed in fruit.
HX739081.1:213-232

CTCCCCGAATTCATAGTCATTTGGAAGTAT213TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAAC

TSA: Pyrus x bretschneideri Unigene966_XinShao mRNA sequence.
JR596366.1:472-491

CTCCCCGAATTCATAGTCATTTGGTAGTAT472TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAAC

TSA: Pyrus x bretschneideri Unigene4986_XinShao mRNA sequence.
JR600242.1:483-502

CTCCCCGAATTCATAGTCATTTGGTAGTAT483TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAAC

TSA: Pyrus x bretschneideri Unigene48870_XinShao mRNA sequence.
JR638941.1:817-836

CTCCCCAAATTCATAGTCATTTGGAAGTAT817TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAAC

Trifolium repens isolate ACLI19 chromosome 02_Occ.
CP125838.1:49679209-49679228

CCTATCAAAGAGATAACCCTTCGGAAAAAT49679209TGAGCAATAGGCAAAGCATCTTTTCAAATGAGAAGGAAGATGTTGATAAC

Trifolium repens isolate ACLI19 chromosome 02_Pall.
CP125839.1:45150727-45150746

CCTATCATAGAGATAACCCTTTGGAAAAAT45150727TGAGCAATAGGCAAAGCATCTTTTCAAATGAGAAGGAAGATGTTGATAAC

Quercus variabilis isolate HB chromosome 4a.
CP129448.1:11376673-11376692

CTTTTCAAATTCATAATCTTTCGGAAAAAT11376673TGAGCAATAGGCAAAGCATCGCTTCAAATGTGATGGGATGTAATGATAGC

Malus hybrid cultivar cultivar Flame chromosome 3.
CP141912.1:745859-745878

CTCTTCAAATTCATAGTCATTTGGAAGTAT745859TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG

Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:708875-708894

CTCTTCGAATTCATAGTCATTTGGAAGTAT708875TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG

Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:726683-726702

CTCTTCAAATTCGTAGTCATTTGGAAGTAT726683TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG

Malus hybrid cultivar cultivar Flame chromosome 3.
CP141929.1:771862-771881

CTCTTCAAATTCATAGTCATTTGGAAGTAT771862TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAAGAAGATAAAAGTAGG

Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:721091-721110

CTCTTCGAATTCGTAGTCATTTGGAAGTAT721091TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG

Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141954.1:35063583-35063602

CTCACTAAATTCGTAGTCATTGGGAAGTAT35063583TGAGCAATAGGCAAAGCATCTTTTAAGGTTTGAAGGGAGAGAGTGATAGC

Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141971.1:35407850-35407869

CTCACTAAATTCGTAGTCATTGGGAAGTAT35407850TGAGCAATAGGCAAAGCATCTTTTAAGGTTTGAAGGGAGAGAGTGATAGC

Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:791251-791270

CTCTTCGAATTCGTAGTCATTTGGAAGTAT791251TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG

Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143359.1:37527982-37528001

CTCACTAAATTCGTAGTCATTGGGAAGTAT37527982TGAGCAATAGGCAAAGCATCTTTTAAGGTTTGAAGGGAGAGAGTGATAGC

Malus hybrid cultivar cultivar SH6 chromosome 3.
CP143360.1:753265-753284

CTCTTCAAATTCATAGTCATTTGGAAGTAT753265TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG

Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:722775-722794

CTCTTCGAATTCGTAGTCATTTTGAAGTAT722775TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG

Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143376.1:35812265-35812284

CTCACTAAATTCGTAGTCATTGGGAAGTAT35812265TGAGCAATAGGCAAAGCATCTTTTAAGGTTTGAAGGGAGAGAGTGATAGC

Malus hybrid cultivar cultivar SH6 chromosome 3.
CP143377.1:657862-657881

CTCTTCAAATTCATAGTCATTTGGAAGTAT657862TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG

Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:765809-765828

CTCTTTGAATTCATAGTCATTTGGAAGTAT765809TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG

Malus sylvestris genome assembly, chromosome: 2.
OU696504.1:37151734-37151753

CTCACTAAATTCGTAGTCATTGGGAAGTAT37151734TGAGCAATAGGCAAAGCATCTTTTAAGGTTTGAAGGGAGAGAGTGATAGC

Malus sylvestris genome assembly, chromosome: 3.
OU696505.1:733547-733566

CTCTTCAAATTCATAGTCATTTGGAAGTAT733547TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAAGAAGATAAAAGTAGG

Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:832126-832145

CTCTTCGAATTCGTAGTCATTTGGAAGTAT832126TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG

Malus domestica genome assembly, chromosome: 2.
OU696678.1:37232507-37232526

CTCACTAAATTCGTAGTCATTGGGAAGTAT37232507TGAGCAATAGGCAAAGCATCTTTTAAGGTTTGAAGGGAGAGAGTGATAGC

Malus domestica genome assembly, chromosome: 3.
OU696679.1:811637-811656

CTCTTCAAATTCATAGTCATTTGGAAGTAT811637TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAAGAAGATAAAAGTAGG

Malus domestica genome assembly, chromosome: 11.
OU696687.1:821740-821759

CTCTTCGAATTCGTAGTCATTTGGAAGTAT821740TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG

Malus domestica genome assembly, chromosome: 2.
OU744543.1:37323540-37323559

CTCACTAAATTCGTAGTCATTGGGAAGTAT37323540TGAGCAATAGGCAAAGCATCTTTTAAGGTTTGAAGGGAGAGAGTGATAGC

Malus domestica genome assembly, chromosome: 3.
OU744544.1:727997-728016

CTCTTCAAATTCATAGTCATTTGGAAGTAT727997TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG

Malus domestica genome assembly, chromosome: 2.
OU744954.1:36904622-36904641

CTCACTAAATTCGTAGTCATTGGGAAGTAT36904622TGAGCAATAGGCAAAGCATCTTTTAAGGTTTGAAGGGAGAGAGTGATAGC

Malus domestica genome assembly, chromosome: 3.
OU744955.1:772172-772191

CTCTTCAAATTCATAGTCATTTGGAAGTAT772172TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAAGAAGATAAAAGTAGG

Malus domestica genome assembly, chromosome: 2.
OU744992.1:37292123-37292142

CTCACTAAATTCGTAGTCATTGGGAAGTAT37292123TGAGCAATAGGCAAAGCATCTTTTAAGGTTTGAAGGGAGAGAGTGATAGC

Malus domestica genome assembly, chromosome: 3.
OU744993.1:750320-750339

CTCTTCAAATTCATAGTCATTTGGAAGTAT750320TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG

Malus domestica genome assembly, chromosome: 11.
OU745001.1:798044-798063

CTCTTCGAATTCGTAGTCATTTGGAAGTAT798044TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG

Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38549939-38549958

CTCCCCGAATTCATAGTCATTTGGAAGTAT38549939TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAAC

Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38564342-38564361

ATCCCCGAATTCATAGTCATTTGGAAGTAT38564342TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAAC

Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38581593-38581612

CTCCCCGAATTCATAGTCATTTGGAAGTAT38581593TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAAC

Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38601855-38601874

CTCCCCGAATTCATAGTCATTTGGAAGTAT38601855TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAAC

Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38643389-38643408

CTCCCCGAATTCATAGTCATTTGGAAGTAT38643389TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAAC

Malus x robusta genome assembly, chromosome: 6.
OY720330.1:664647-664666

CTCTTCAAATTCATAGTCATTTGGAAGTAT664647TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAGG

Crataegus laevigata genome assembly, chromosome: 6.
OY756943.1:38405161-38405180

CTCCCCGAATTCATAGTCATTTGGAAGTAT38405161TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAAC

Crataegus laevigata genome assembly, chromosome: 6.
OY756943.1:38442141-38442160

CTCCCCGAATTCATAGTCATTTGGAAGTAT38442141TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAAC

Crataegus laevigata genome assembly, chromosome: 6.
OY756943.1:38471481-38471500

CTCCCCAAATTCATAGTCATTTGGAAGTAT38471481TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAAC

Pyrus communis genome assembly, chromosome: 8.
OY757075.1:25619353-25619372

ATCCCCGAATTCATAGTCATTTGGAAGTAT25619353TGAGCAATAGGCAAAGCATCTTTTCAAATGTGAAGGAAGATAAAAGTAAC

Pyrus communis genome assembly, chromosome: 10.
OY757077.1:26497471-26497490

CTCACTAAATTCGTAGTCATTGGGAAGTAT26497471TGAGCAATAGGCAAAGCATCTTTTAAGGTTTGAAGGGAGAGAGTGATAGC

Pyrus communis genome assembly, chromosome: 14.
OY757081.1:1706430-1706449

CTTTTCAAATTCATAGTCTTTTGGAAAAAT1706430TGAGCAATAGGCAAAGCATCGTTTCAAGTAAGTTGGAAGATAGTGGTAGC

Potentilla sterilis genome assembly, chromosome: 1.
OY821754.1:74068211-74068230

TTTCCCAAATTCATAGTCATTGGGAAGTAT74068211TGAGCAATAGGCAAAGCATCTCTTCAATGTTGAAGGGAGATAATGATAAC

Potentilla sterilis genome assembly, chromosome: 11.
OY821764.1:45712521-45712540

TTTCCCAAATATATAGTCATTGGGAAGTAT45712521TGAGCAATAGGCAAAGCATCTCTTCAATGTTGAAGGGAGATAATGATAAC

Potentilla sterilis genome assembly, chromosome: 13.
OY821766.1:11487374-11487393

TTTCCCAAATTCATAGTCATTGGGTACTAT11487374TGAGCAATAGGCAAAGCATCTCTTCATAGTTGAAGGGAGATAATGATAAC

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Debug Info:

0.008 | 0.008 | search_start;
0.242 | 0.233 | search_plus_done; http://172.18.8.135:50400/match?q=TGAGCAATAGGCAAAGCATC&k=0&no_gap=0&offset=0&limit=50
0.306 | 0.064 | search_minus_done; http://172.18.8.135:50400/match?q=GATGCTTTGCCTATTGCTCA&k=0&no_gap=0&offset=0&limit=0
0.306 | 0.000 | cgi_end;

Summary:

Results:

Data Export:

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