GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 16:53:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Scleropages formosus genome assembly, chromosome: 5.
LR584070.1:23706725-23706744
ACGTTGATGCTGTACTGACAACACGCTCAA23706725TGAGCCACTTGAATTTGTCGTGTCTCCTTATTTTTTCTCTTTATCCGTGA
Tridacna gigas genome assembly, chromosome: 3.
OX244030.2:67294421-67294440
TTCTTATCTTCAAAGGCAGGTTTCAGTTTT67294421TGAGCCACTTGAATTTGTCGTCTTCGTTTGGCAAAGGGCTAATCAGTCAA
Musa troglodytarum cultivar karat chromosome 6.
CP097508.1:9921467-9921486
CGATGGAATGACTCCTGATAGATTGTTATA9921467CGACAAATTCAAGTGGCTCAGAGAATCCAGCGCTGAAAAGCTTTCGGGAA
Musa troglodytarum cultivar karat chromosome 6.
CP097508.1:9943360-9943379
CGATGGAATGACTCCTGATAGATTGTTATA9943360CGACAAATTCAAGTGGCTCAGAGAATCCAGCGCTGAAAAGCTTTCGGAAT
Musa troglodytarum cultivar karat chromosome 6.
CP097508.1:9981175-9981194
CGATGGAATGACTCCTGATAGATTGTTATA9981175CGACAAATTCAAGTGGCTCAGAGAATCCAGCGCTGAAAAGCTTTCGGAAT
Musa troglodytarum cultivar karat chromosome 6.
CP097508.1:10001547-10001566
CGATGGAATGACTCCTGATAGATTGTTATA10001547CGACAAATTCAAGTGGCTCAGAGAATCCAGCGCTGAAAAGCTTTCGGGAA
Musa troglodytarum cultivar karat chromosome 6.
CP097508.1:10028175-10028194
CGATGGAATGACTCCTGATAGATTGTTATA10028175CGACAAATTCAAGTGGCTCAGAGAATCCAGCGCTGAAAAGCTTTCGGGAA
Musa acuminata subsp. malaccensis isolate AA chromosome 6.
CP126375.1:7751743-7751762
TGATGGAATGACTCCTGATAGGTTGTTATA7751743CGACAAATTCAAGTGGCTCAGAGAATCTAGCTCTGAAAAGCTTTCGGGAA
Musa acuminata subsp. malaccensis isolate AA chromosome 6.
CP126375.1:7783098-7783117
TGACGGAACGACTCCTGATAGATTGTTATA7783098CGACAAATTCAAGTGGCTCAGAGAATCTAGCGCTGAAAAGCTTTCGGGAA
Musa acuminata subsp. malaccensis isolate AA chromosome 17.
CP126386.1:7738570-7738589
TGACGGAACGACTCCTGATAGGTTGTTATA7738570CGACAAATTCAAGTGGCTCAGAGAATCTAGCGCTGAAAAGCTTTCGGGAA
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A06.
HG996471.1:7703091-7703110
TGATGGAATGACTCCTGATAGGTTGTTGTA7703091CGACAAATTCAAGTGGCTCAGAGAATCTAGCGCTGAAAAGCTTTCGGGAA
Inga laurina genome assembly, chromosome: 2.
OY979702.1:67130906-67130925
CTCTGGAATAGGCCCTGAAAAGTTGTTGTA67130906CGACAAATTCAAGTGGCTCAATGAAGTAAGGGAAGACATGCTACTTGGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGAGCCACTTGAATTTGTCG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAGCCACTTGAATTTGTCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.110 | 0.102 | search_plus_done; http://172.18.8.135:50400/match?q=TGAGCCACTTGAATTTGTCG&k=0&no_gap=0&offset=0&limit=50
0.143 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=CGACAAATTCAAGTGGCTCA&k=0&no_gap=0&offset=0&limit=48
0.149 | 0.007 | cgi_end;

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