GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 13:13:54, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BOHKJ91TR BOHK Brassica oleracea genomic clone BOHKJ91, genomic survey sequence.
BH497839.1:631-656
GTTGCCAAAGTATGATCTACTCTAGTTATG631TGAGCCTTGCTTGCATTTCTAGACCAAA
BONJX43TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONJX43, genomic survey sequence.
BZ453121.1:48-73
GTTGCCAAAGTATGATCTACTCTAGTTATG48TGAGCCTTGCTTGCATTTCTAGACCAAAATTTCAGTTTTCTCACTAAACGGTCGCT
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:38117427-38117452
GTTGCCAAAGTATGATCTACTCTAGTTATG38117427TGAGCCTTGCTTGCATTTCTAGACCAAAATTTCAGTTTTCTCACTAAACGGTCGCT
Brassica napus genome assembly, chromosome: C03.
HG994367.1:41118190-41118215
AGCGACCGTTTAGTGAGAAAACTGAAATTT41118190TGGTCTAGAAATGCAAGCAAGGCTCACATAACTAGAGTAGATCATACTTTGGCAAC
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:41621385-41621410
AGCGACCGTTTAGTGAGAAAACTGAAATTT41621385TGGTCTAGAAATGCAAGCAAGGCTCACATAACTAGAGTAGATCATACTTTGGCAAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGAGCCTTGCTTGCATTTCTAGACCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAGCCTTGCTTGCATTTCTAGACCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.126 | 0.117 | search_plus_done; http://172.18.8.135:50400/match?q=TGAGCCTTGCTTGCATTTCTAGACCA&k=0&no_gap=0&offset=0&limit=50
0.163 | 0.037 | search_minus_done; http://172.18.8.135:50400/match?q=TGGTCTAGAAATGCAAGCAAGGCTCA&k=0&no_gap=0&offset=0&limit=47
0.165 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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