GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 05:15:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KBrB108J08R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB108J08, genomic survey sequence.
ED521199.1:871-890
CGTCACAACCCAAGAGTATTAATCGAAATC871ATTCCTCGGTGTTCAGCTCATTTAAGTGATACAAGATTTTTGACCTCCGC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084F02, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189487.2:2605-2624
TCGTCACAACCAAGAGTATTAATCGAAATC2605ATTCCTCGGTGTTCAGCTCATTTAAGTGATACAAGATTTTGACCTCCGCT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS001F19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC189625.2:139954-139973
TCGTCACAACCAAGAGTATTAATCGAAATC139954ATTCCTCGGTGTTCAGCTCATTTAAGTGATACAAGATTTTGACCTCCGCT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' linkage group A02 clone KBrH026E14, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.
AC234743.1:100713-100732
TCGTCACAACCAAGAGTATTAATCGAAATC100713ATTCCTCGGTGTTCAGCTCATTTAAGTGATACAAGATTTTGACCTCCGCT
Brassica rapa genome, scaffold: A09.
LR031568.1:47544978-47544997
TCGTCACAACCAAGAGTATTAATCGAAATC47544978ATTCCTCGGTGTTCAGCTCATTTAAGTGATACAAGATTTTGACCTCCGCT
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:58011567-58011586
TCGTCACAACCAAGAGTATTAATCGAAATC58011567ATTCCTCGGTGTTCAGCTCATTTAAGTGATACAAGATTTTGACCTCCGCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGAGCTGAACACCGAGGAAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAGCTGAACACCGAGGAAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.093 | 0.084 | search_plus_done; http://172.18.8.135:50400/match?q=TGAGCTGAACACCGAGGAAT&k=0&no_gap=0&offset=0&limit=50
0.139 | 0.045 | search_minus_done; http://172.18.8.135:50400/match?q=ATTCCTCGGTGTTCAGCTCA&k=0&no_gap=0&offset=0&limit=50
0.143 | 0.004 | cgi_end;

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