GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:07:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Delphinus delphis genome assembly, chromosome: 1.
OX465326.1:122234295-122234314
GGGATGGAGAGAGTGGTACAGGAGGAGTTC122234295TGAGGATCTTGGATCTTGGCCTCTAGGATCAGCGCTCTGAGAAAGTGAGG
Balaenoptera acutorostrata genome assembly, chromosome: 1.
OX465350.1:126968417-126968436
GGGATGGAGACAGCGGTACAGGAGGAGTTC126968417TGAGGATCTTGGATCTTGGCCTCTAGAATCAGCACTCTGAGAAAGTGAGG
Phocoena phocoena genome assembly, chromosome: 1.
OZ004757.1:123296830-123296849
GGGATGGAGAGAGCGGTACAGGAGGAGTTC123296830TGAGGATCTTGGATCTTGGCCTCTAGAATCAGCGCTCTGAGAAAGTGAGG
Arachis hypogaea DNA, clone: AHGS49L15.
DH961610.1:45-64
TAGCAGCTGCCATGGCTTCAGAATGGATCT45TGAGGATCTTGGATCTTGGCGACGGTCGAGCTGTTGGTGGCGCGGGAGTG
Arachis hypogaea cultivar Shitouqi chromosome A01.
CP030983.1:19102654-19102673
TAGCAGCTGCCATGGCTTCAGAATGGATCT19102654TGAGGATCTTGGATCTTGGCGACGGTCGAGCTGTTGGTGGCGCGGGAGTG
Arachis hypogaea cultivar Shitouqi chromosome A08.
CP030990.1:35361012-35361031
TAGCAGCTGCCATGGCTTCAGAATGGATCT35361012TGAGGATCTTGGATCTTGGCGACGGTGGAGCTGTTGGTGGCGCGGGAGTG
Hedera helix genome assembly, chromosome: 6.
OX359269.1:14077992-14078011
TATATGAGTTGGGCAGAAGTTAGACCCTCA14077992TGAGGATCTTGGATCTTGGCTTGTTTCATGAAGTTAAGAGGTTCTCTTTT
Orcinus orca genome assembly, chromosome: 1.
OW443360.1:64149230-64149249
CCTCACTTTCTCAGAGCGCTGATCCTAGAG64149230GCCAAGATCCAAGATCCTCAGAACTCCTCCTGTACCACTCTCTCCATCCC
Hyperoodon ampullatus genome assembly, chromosome: 2.
OX457057.1:174166496-174166515
CCTCACTTTCTCAGAGTGCTGATGCTAGAG174166496GCCAAGATCCAAGATCCTCAGAACTCCTCCTGTACCGCTCTCTCCATCCC
Lagenorhynchus albirostris genome assembly, chromosome: 2.
OX459073.1:62759726-62759745
CCTCACTTTCTCAGAGCGCTGATCCTAGAG62759726GCCAAGATCCAAGATCCTCAGAACTCCTCCTGTACCACTCTCTCCATCCC
Stenella coeruleoalba genome assembly, chromosome: 1.
OX596385.1:189942731-189942750
CCTCACTTTCTCAGAGCGCTGATCCTAGAG189942731GCCAAGATCCAAGATCCTCAGAACTCCTCCTGTACCACTCTCTCCATCCC
Globicephala melas genome assembly, chromosome: 1.
OY734039.1:62769427-62769446
CCTCACTTTCTCAGAGCGCTGATCCTAGAG62769427GCCAAGATCCAAGATCCTCAGAACTCCTCCTGTACCACTCTCTCCATCCC
Erithacus rubecula genome assembly, chromosome: 28.
LR812132.1:342624-342643
AGTTGAGATGCACCAGATCCAAACCTCACA342624GCCAAGATCCAAGATCCTCACTGCAGAAAGGCCCTGACTGTCCTTTAGCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGAGGATCTTGGATCTTGGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAGGATCTTGGATCTTGGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.199 | 0.190 | search_plus_done; http://172.18.8.135:50400/match?q=TGAGGATCTTGGATCTTGGC&k=0&no_gap=0&offset=0&limit=50
0.293 | 0.094 | search_minus_done; http://172.18.8.135:50400/match?q=GCCAAGATCCAAGATCCTCA&k=0&no_gap=0&offset=0&limit=43
0.297 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).