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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 08:42:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Mutant Elaeis guineensis clone RL155 catalase 2 mRNA, partial cds.
KC206511.1:944-967
AACCGCCTCAATGTCAAACCAAGCATGTGA944TGAGGATGCAGATGCCAAGCCATAGGCTGTTATGTTTATGCAGTGAGTTATGTT
OPMF01455 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone 6-D01-T3.seq, mRNA sequence.
EL685215.1:195-218
AACCGCCTCAATGTCAAACCAAGCATGTGA195TGAGGATGCAGATGCCAAGCCATAGGCTGTTATGTTTATGCAGTGAGTTATGTT
OPVM00399 Elaeis guineensis shoot apex Elaeis guineensis cDNA clone 86-C02-T3.seq, mRNA sequence.
EL686793.1:338-361
AACCGCCTCAATGTCAAACCAAGCATGTGA338TGAGGATGCAGATGCCAAGCCATAGGCTGTTATGTTTATGCAGTGAGTTATGTT
OPR00487 Elaeis guineensis root Elaeis guineensis cDNA clone PLATE208-D1-T3.seq, mRNA sequence.
EL690456.1:413-436
AACCGCCTCAATGTCAAACCAAGCATGTGA413TGAGGATGCAGATGCCAAGCCATAGGCTGTTATGTTTATGCAGTGAGTTATGTT
pOP-CEO02817_EST_C_1_pSK_SK CEO (Oil Palm Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CEO02817 5', mRNA sequence.
EY396870.1:156-179
AACCGCCTCAATGTCAAACCAAGCATGTGA156TGAGGATGCAGATGCCAAGCCATAGGCTGTTATGTTTATGCAGTGAGTTATGTT
pOP-EAP00536_EST_C_1_pBSK_SK EA (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EAP00536 5', mRNA sequence.
EY405584.1:286-309
AACCGCCTCAATGTCAAACCAAGCATGTGA286TGAGGATGCAGATGCCAAGCCATAGGCTGTTATGTTTATGCAGTGAGTTATGTT
pOP-EAP05044_EST_C_1_pBSK_SK EA (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EAP05044 5', mRNA sequence.
EY405751.1:384-407
AACCGCCTCAATGTCAAACCAAGCATGTGA384TGAGGATGCAGATGCCAAGCCATAGGCTGTTATGTTTATGCAGTGAGTTATGTT
pOP-EAP00639_EST_C_1_pBSK_SK EA (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EAP00639 5', mRNA sequence.
EY405927.1:314-337
AACCGCCTCAATGTCAAACCAAGCATGTGA314TGAGGATGCAGATGCCAAGCCATAGGCTGTTATGTTTATGCAGTGAGTTATGTT
pOP-EAP00266_EST_C_1_pBSK_SK EA (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EAP00266 5', mRNA sequence.
EY405947.1:121-144
AACCGCCTCAATGTCAAACCAAGCATGTGA121TGAGGATGCAGATGCCAAGCCATAGGCTGTTATGTTTATGCAGTGAGTTATGTT
pOP-EAP02864_EST_C_1_pBSK_SK EA (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EAP02864 5', mRNA sequence.
EY406437.1:554-577
AACCGCCTCAATGTCAAACCAAGCATGTGA554TGAGGATGCAGATGCCAAGCCATAGGCTGTTATG
pOP-EAP03667_EST_C_1_pBSK_SK EA (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EAP03667 5', mRNA sequence.
EY406727.1:240-263
AACCGCCTCAATGTCAAACCAAGCATGTGA240TGAGGATGCAGATGCCAAGCCATAGGCTGTTATGTTTATGCAGTGAGTTATGTT
pOP-EAP02386_EST_C_1_pBSK_SK EA (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EAP02386 5', mRNA sequence.
EY406841.1:290-313
AACCGCCTCAATGTCAAACCAAGCATGTGA290TGAGGATGCAGATGCCAAGCCATAGGCTGTTATGTTTATGCAGTGAGTTATGTT
pOP-EAP00638_EST_C_1_pBSK_SK EA (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EAP00638 5', mRNA sequence.
EY407407.1:320-343
AACCGCCTCAATGTCAAACCAAGCATGTGA320TGAGGATGCAGATGCCAAGCCATAGGCTGTTATGTTTATGCAGTGAGTTATGTT
pOP-EO07300_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO07300 5', mRNA sequence.
EY412263.1:545-568
AACCGCCTCAATGTCAAACCAAGCATGTGA545TGAGGATGCAGATGCCAAGCCATAGGCTGTTATGTTTATGCAGTGAGTTATGTT
pOP-EO04805_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO04805 5', mRNA sequence.
EY412531.1:372-395
AACCGCCTCAATGTCAAACCAAGCATGTGA372TGAGGATGCAGATGCCAAGCCATAGGCTGTTATGTTTATGCAGTGAGTTATGTT
Elaeis guineensis clone estEgSNP34 catalase 2 (CAT2) mRNA, complete cds.
JX438716.1:1506-1529
AACCGCCTCAATGTCAAACCAAGCATGTGA1506TGAGGATGCAGATGCCAAGCCATAGGCTGTTATGTTTATGCAGTGAGTTATGTT
EG-A11_005_D08 Oil palm abnormal apex Lambda Zap Library Elaeis guineensis cDNA, mRNA sequence.
CN600012.1:339-362
AACATAACTCACTGCATAAACATAACAGCC339TATGGCTTGGCATCTGCATCCTCATCACATGCTTGGTTTGACATTGAGGCGGTT
OPMF00519 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone 121-D11-T3.seq, mRNA sequence.
EL684282.1:182-205
AACATAACTCACTGCATAAACATAACAGCC182TATGGCTTGGCATCTGCATCCTCATCACATGCTTGGTTTGACATTGAGGCGGTT
TSA: Elaeis guineensis isotig02390.Elguifruit mRNA sequence.
JO089643.1:238-261
AACATAACTCACTGCATAAACATAACAGCC238TATGGCTTGGCATCTGCATCCTCATCACATGCTTGGTTTGACATTGAGGCGGTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGAGGATGCAGATGCCAAGCCATA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAGGATGCAGATGCCAAGCCATA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.108 | 1.099 | search_plus_done; http://172.18.8.135:50400/match?q=TGAGGATGCAGATGCCAAGCCATA&k=0&no_gap=0&offset=0&limit=50
1.221 | 0.114 | search_minus_done; http://172.18.8.135:50400/match?q=TATGGCTTGGCATCTGCATCCTCA&k=0&no_gap=0&offset=0&limit=34
1.224 | 0.002 | cgi_end;

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