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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-18 05:08:25, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Cucumis sativus gynoecious line (FF) branched-chain amino acid transaminase (BCAT) gene, exons 8 through 10 and partial cds.
DQ839407.1:954-976
CTATAGGATTGATAAAAGAGTTGAAGAGAA954TGAGTTCAATCAAGATGACCTCTTACCAGGATTTTATATCTTAGAATTTCTCT
Cucumis sativus branched-chain amino acid transaminase (BCAT) gene, exons 8 through 10 and partial cds.
DQ839408.2:1501-1523
CTATAGGATTGATAAAAGAGTTGAAGAGAA1501TGAGTTCAATCAAGATGACCTCTTACCAGGATTTTATATCTTAGAATTTCTCT
Cucumis melo isolate PI 511890 chromosome 8.
CP136107.1:4501056-4501078
AAAAACCTTGTAGAATATAATATCCTGGTA4501056AGAGGTCATCTTGATTGAACTCATTCTTTTCAACTCTGTTATCAAACCAATAG
Cucumis sativus 1-aminocyclopropane-1-carboxylic acid synthase (ACS1G) gene, promoter region, 5' UTR, and partial cds.
DQ353947.1:1651-1673
AGAGAAATTCTAAGATATAAAATCCTGGTA1651AGAGGTCATCTTGATTGAACTCATTCTCTTCAACTCTTTTATCAATCCTATAG
Cucumis sativus gynoecious line (FF) 1-aminocyclopropane-1-carboxylate synthase (ACS1G) gene, complete cds.
DQ839406.1:3458-3480
AGAGAAATTCTAAGATATAAAATCCTGGTA3458AGAGGTCATCTTGATTGAACTCATTCTCTTCAACTCTTTTATCAATCCTATAG
Cucumis sativus cultivar TH169 1-aminocyclopropane-1-carboxylate synthase, hypothetical protein, DNA binding / transcription factor, and branched-chain amino acid aminotransferase genes, complete cds.
KT885085.1:39109-39131
AGAGAAATTCTAAGATATAAAATCCTGGTA39109AGAGGTCATCTTGATTGAACTCATTCTCTTCAACTCTTTTATCAATCCTATAG
Cucumis sativus cultivar WDSGD 1-aminocyclopropane-1-carboxylate synthase, hypothetical protein, DNA binding / transcription factor, and branched-chain amino acid aminotransferase genes, complete cds.
KT885086.1:39104-39126
AGAGAAATTCTAAGATATAAAATCCTGGTA39104AGAGGTCATCTTGATTGAACTCATTCTCTTCAACTCTTTTATCAATCCTATAG
Cucumis sativus cultivar WFEJ 1-aminocyclopropane-1-carboxylate synthase, hypothetical protein, DNA binding / transcription factor, and branched-chain amino acid aminotransferase genes, complete cds.
KT885087.1:39108-39130
AGAGAAATTCTAAGATATAAAATCCTGGTA39108AGAGGTCATCTTGATTGAACTCATTCTCTTCAACTCTTTTATCAATCCTATAG
Cucumis sativus cultivar WJE F11 1-aminocyclopropane-1-carboxylate synthase, hypothetical protein, DNA binding / transcription factor, and branched-chain amino acid aminotransferase genes, complete cd
KT885088.1:39189-39211
AGAGAAATTCTAAGATATAAAATCCTGGTA39189AGAGGTCATCTTGATTGAACTCATTCTCTTCAACTCTTTTATCAATCCTATAG
Cucumis sativus cultivar TH118FLM 1-aminocyclopropane-1-carboxylate synthase, hypothetical protein, DNA binding / transcription factor, and branched-chain amino acid aminotransferase genes, complete c
KT885089.1:39200-39222
AGAGAAATTCTAAGATATAAAATCCTGGTA39200AGAGGTCATCTTGATTGAACTCATTCTCTTCAACTCTTTTATCAATCCTATAG
Cucumis sativus cultivar WMEJ 1-aminocyclopropane-1-carboxylate synthase, hypothetical protein, DNA binding / transcription factor, and branched-chain amino acid aminotransferase genes, complete cds.
KT885090.1:39229-39251
AGAGAAATTCTAAGATATAAAATCCTGGTA39229AGAGGTCATCTTGATTGAACTCATTCTCTTCAACTCTTTTATCAATCCTATAG
Cucumis sativus cultivar WNE F8 1-aminocyclopropane-1-carboxylate synthase, hypothetical protein, DNA binding / transcription factor, and branched-chain amino acid aminotransferase genes, complete cds
KT885091.1:39320-39342
AGAGAAATTCTAAGATATAAAATCCTGGTA39320AGAGGTCATCTTGATTGAACTCATTCTCTTCAACTCTTTTATCAATCCTATAG
Cucumis melo genomic scaffold, anchoredscaffold00007.
LN681875.1:4501331-4501353
AAAAACCTTGTAGAATATAATATCCTGGTA4501331AGAGGTCATCTTGATTGAACTCATTCTTTTCAACTCTGTTATCAAACCAATAG
Cucumis melo genomic chromosome, chr_8.
LN713262.1:4501331-4501353
AAAAACCTTGTAGAATATAATATCCTGGTA4501331AGAGGTCATCTTGATTGAACTCATTCTTTTCAACTCTGTTATCAAACCAATAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGAGTTCAATCAAGATGACCTCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGAGTTCAATCAAGATGACCTCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.097 | 0.087 | search_plus_done; http://172.18.8.135:50400/match?q=TGAGTTCAATCAAGATGACCTCT&k=0&no_gap=0&offset=0&limit=50
0.158 | 0.061 | search_minus_done; http://172.18.8.135:50400/match?q=AGAGGTCATCTTGATTGAACTCA&k=0&no_gap=0&offset=0&limit=48
0.166 | 0.008 | cgi_end;

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