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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 16:16:03, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:39986328-39986349
GTGTAAAGTTATTAGTTATTACTCCATAGA39986328TGATATGTTAGTTCACAGTTCGTCTAAACGAAGTAGTAAGACACACACAGAC
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:36684548-36684569
GTGTAAAGTTATTAGTTATTACTCCATAGA36684548TGATATGTTAGTTCACAGTTCGTCTAAACGAAGTAGTAAGACACACACAGAC
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:40284215-40284236
GTGTAAAGTTATTAGTTATTACTCCATAGA40284215TGATATGTTAGTTCACAGTTCGTCTAAACGAAGTAGTAAGACACACACAGAC
Malus domestica genome assembly, chromosome: 5.
OU696681.1:39575455-39575476
GTGTAAAGTTATTAGTTATTACTCCATAGA39575455TGATATGTTAGTTCACAGTTCGTCTAAACGAAGTAGTAAGACACACACAGAC
Malus domestica genome assembly, chromosome: 5.
OU744546.1:39144283-39144304
GTGTAAAGTTATTAGTTATTACTCCATAGA39144283TGATATGTTAGTTCACAGTTCGTCTAAACGAAGTAGTAAGACACACACAGAC
Malus domestica genome assembly, chromosome: 5.
OU744995.1:40440501-40440522
GTGTAAAGTTATTAGTTATTACTCCATAGA40440501TGATATGTTAGTTCACAGTTCGTCTAAACGAAGTAGTAAGACACACACAGAC
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:6264698-6264719
GTCTTTGTGTGTCTTACTACTTCGTTTAGA6264698CGAACTGTGAACTAACATATCATCTATGGAGTAATAACTAATAACTTTACAC
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:6773374-6773395
GTCTTTGTGTGTCTTACTACTTCGTTTAGA6773374CGAACTGTGAACTAACATATCATCTATGGAGTAATAACTAATAACTTTACAC
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:5341426-5341447
GTCTGTGTGTGTCTTACTACTTCGTTTAGA5341426CGAACTGTGAACTAACATATCATCTATGGAGTAATATTAATCTACCATTGTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGATATGTTAGTTCACAGTTCG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGATATGTTAGTTCACAGTTCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.177 | 0.169 | search_plus_done; http://172.18.8.135:50400/match?q=TGATATGTTAGTTCACAGTTCG&k=0&no_gap=0&offset=0&limit=50
0.285 | 0.108 | search_minus_done; http://172.18.8.135:50400/match?q=CGAACTGTGAACTAACATATCA&k=0&no_gap=0&offset=0&limit=44
0.287 | 0.002 | cgi_end;

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