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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-03 14:32:25, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Limosilactobacillus frumenti strain LF145 chromosome, complete genome.
CP044534.1:479108-479127
TATGCCCCTCATTTAAAAGCGCAAAATAAG479108TGATTTCACAACTATACCAATATTTTATATAGCGCTTTCTGTTCTTGAAT
Amphipyra tragopoginis genome assembly, chromosome: 22.
HG992013.1:18405823-18405842
TCTGTAAACTCGATACACCTTACAACGTAA18405823TGATTTCACAACTATACCAATATAAAGATAGTGGAATCGCTTAATAAGGA
Epistrophe grossulariae genome assembly, chromosome: 2.
OV839567.1:67484470-67484489
AAAATCTAGATTACATGTAGTATGAACTAT67484470TGATTTCACAACTATACCAATAGTTTACTTGTAAATCAAAATAATAAATT
Maratus speciosus genome assembly, chromosome: 8.
OZ010794.1:318970575-318970594
AATGGAATATAAATATTAGCTATTATTCAA318970575TGATTTCACAACTATACCAATCTACATAATAGATAAAATGTAAATTCTTA
ESTRTADTMSD1_275 ESTRTADTMSD1 Camellia sinensis var. assamica cDNA clone 234 5', mRNA sequence.
GH623847.1:157-176
TGATCTTAAGATTGTGTGAATTTTGTGTTA157TTGGTATAGTTGTGAAATCAAAGATGTGTTTTTTGTTTTTCTACTAAAAA
Sambucus nigra genome assembly, chromosome: 5.
OX422211.1:702809066-702809085
GTGTTTGTTGATGCTTTTTTTTTTCTTCTT702809066TTGGTATAGTTGTGAAATCAAGCCTAATCGACCCATGTTTAAGCACATTC
Aphrophora alni genome assembly, chromosome: 2.
OY740767.1:143895362-143895381
GTACTCTGGATCGTACAAGAAAATGTGATA143895362TTGGTATAGTTGTGAAATCAGACAGTGTTGTTTAAAATAAAGGATTGTTG
Plagodis pulveraria genome assembly, chromosome: 17.
OY982966.1:10220392-10220411
TAAGAAAGGGAAATGTCAGCTGAAACTAAG10220392TTGGTATAGTTGTGAAATCAATTCGTGAAACCATTCTGCAACTACCTATG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGATTTCACAACTATACCAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGATTTCACAACTATACCAA | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.277 | 0.269 | search_plus_done; http://172.18.8.135:50400/match?q=TGATTTCACAACTATACCAA&k=0&no_gap=0&offset=0&limit=50
0.470 | 0.193 | search_minus_done; http://172.18.8.135:50400/match?q=TTGGTATAGTTGTGAAATCA&k=0&no_gap=0&offset=0&limit=46
0.473 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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