GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-20 13:43:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

NF007H08ST1F1000 Developing stem Medicago truncatula cDNA clone NF007H08ST 5', mRNA sequence.
AW688464.2:136-159
CGGCACGAGGAAAGAAGTTCAACAACATTT136TGATTTGAAGGCATGGGTTTGTGTGTCTGAGGATTTTGATATTATGAGAGTAAC
NF085H01ST1F1013 Developing stem Medicago truncatula cDNA clone NF085H01ST 5', mRNA sequence.
BE326035.1:63-86
TTACAATGATAAAGAAGTTCAACAACATTT63TGATTTGAAGGCATGGGTTTGTGTGTCTGAGGATTTTGATATTATGAGAGTAAG
M.truncatula DNA sequence *** SEQUENCING CANCELLED *** from clone MTH2-72P19.
CU062623.4:25658-25681
TTACAATGATAAAGAAGTTCAACACCATTT25658TGATTTGAAGGCATGGGTTTGTGTGTCTGAGGATTTTGATATTATGAGAGTAAC
M.truncatula DNA sequence *** SEQUENCING CANCELLED *** from clone MTH2-72P19.
CU062623.4:63792-63815
TTACAATGATAAAGAAGTTCAACAACATTT63792TGATTTGAAGGCATGGGTTTGTGTGTCTGAGGATTTTGATATTATGAGAGTAAC
Medicago truncatula clone mth2-15e6, complete sequence.
AC145027.17:25401-25424
TTACAATGATAAAGAAGTTCAACACCATTT25401TGATTTGAAGGCATGGGTTTGTGTGTCTGAGGATTTTGATATTATGAGAGTAAC
Medicago truncatula clone mth2-15e6, complete sequence.
AC145027.17:63539-63562
TTACAATGATAAAGAAGTTCAACAACATTT63539TGATTTGAAGGCATGGGTTTGTGTGTCTGAGGATTTTGATATTATGAGAGTAAC
M.truncatula DNA sequence from clone MTH2-59B18 on chromosome 3.
CT030245.8:104695-104718
TTACAATGATAAAGAAGTTCAACAACATTT104695TGATTTGAAGGCATGGGTTTGTGTGTCTGAGGATTTTGATATTATGAGAGTAAC
M.truncatula DNA sequence from clone MTH2-46O20 on chromosome 3.
CT990605.5:42562-42585
TTACAATGATAAAGAAGTTCAACACCATTT42562TGATTTGAAGGCATGGGTTTGTGTGTCTGAGGATTTTGATATTATGAGAGTAAC
M.truncatula DNA sequence from clone MTH2-40P6 on chromosome 3.
CU041230.16:15397-15420
TTACAATGATAAAGAAGTTCAACAACATTT15397TGATTTGAAGGCATGGGTTTGTGTGTCTGAGGATTTTGATATTATGAGAGTAAG
M.truncatula DNA sequence from clone MTH2-40P6 on chromosome 3.
CU041230.16:76620-76643
TTACAATGATAAAGAAGTTCAACACCATTT76620TGATTTGAAGGCATGGGTTTGTGTGTCTGAGGATTTTGATATTATGAGAGTAAC
M.truncatula DNA sequence from clone MTH2-40P6 on chromosome 3.
CU041230.16:114757-114780
TTACAATGATAAAGAAGTTCAACAACATTT114757TGATTTGAAGGCATGGGTTTGTGTGTCTGAGGATTTTGATATTATGAGAGTAAC
M.truncatula DNA sequence from clone MTE1-71J17 on chromosome 3.
CU659667.5:4964-4987
TTACAATGATAAAGAAGTTCAACACCATTT4964TGATTTGAAGGCATGGGTTTGTGTGTCTGAGGATTTTGATATTATGAGAGTAAC
M.truncatula DNA sequence from clone MTE1-71J17 on chromosome 3.
CU659667.5:43097-43120
TTACAATGATAAAGAAGTTCAACAACATTT43097TGATTTGAAGGCATGGGTTTGTGTGTCTGAGGATTTTGATATTATGAGAGTAAC
M.truncatula DNA sequence from clone MTE1-77G23 on chromosome 3.
CU896663.2:12296-12319
TTACAATGATAAAGAAGTTCAACAACATTT12296TGATTTGAAGGCATGGGTTTGTGTGTCTGAGGATTTTGATATTATGAGAGTAAC
Trifolium dubium genome assembly, chromosome: 5.
OX638066.1:6631550-6631573
TTACAATGATAAAGATGTTCAACAACATTT6631550TGATTTGAAGGCATGGGTTTGTGTGTCTGAGGATTTTGATATTATGAGAGTAAC
M.truncatula DNA sequence from clone MTH2-154K9 on chromosome 3.
CT963130.10:87466-87489
GTTACTCTCATAATATCAAAATCCTCAGAG87466ACACAAACCCATGCCTTCAAATCAAAATGTTGTTGAACTTCTTTATCATTGTAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGATTTGAAGGCATGGGTTTGTGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGATTTGAAGGCATGGGTTTGTGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.116 | 0.108 | search_plus_done; http://172.18.8.135:50400/match?q=TGATTTGAAGGCATGGGTTTGTGT&k=0&no_gap=0&offset=0&limit=50
0.140 | 0.024 | search_minus_done; http://172.18.8.135:50400/match?q=ACACAAACCCATGCCTTCAAATCA&k=0&no_gap=0&offset=0&limit=35
0.141 | 0.001 | cgi_end;

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