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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-13 14:40:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar SH6 chromosome 8.
CP143365.1:27369796-27369820
TTAGTGGAGTATAAACGTAAAGCTTCTTTA27369796TGCAAAGATAGGTAGATATATGCCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCT
Malus hybrid cultivar cultivar SH6 chromosome 8.
CP143382.1:28399017-28399041
TTAGTGGAGTATAAACGTAAAGCTTCTTTA28399017TGCAAAGATAGGTAGATATATGCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
Malus sylvestris genome assembly, chromosome: 8.
OU696510.1:26407489-26407513
TTAGTGGAGTATAAACGTAAAGCTTCTTTA26407489TGCAAAGATAGGTAGATATATGCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
Malus domestica genome assembly, chromosome: 8.
OU696684.1:26116275-26116299
TTAGTGGAGTATAAACGTAAAGCTTCTTTA26116275TGCAAAGATAGGTAGATATATGCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
Malus domestica genome assembly, chromosome: 8.
OU744549.1:26515718-26515742
TTAGTGGAGTATAAACGTAAAGCTTCTTTA26515718TGCAAAGATAGGTAGATATATGCCATCTCTCTCTCTCTCTCTCTCTCTTCAGCAG
Malus domestica genome assembly, chromosome: 8.
OU744960.1:26387162-26387186
TTAGTGGAGTATAAACGTAAAGCTTCTTTA26387162TGCAAAGATAGGTAGATATATGCCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCT
Malus domestica genome assembly, chromosome: 8.
OU744998.1:27126143-27126167
TTAGTGGAGTATAAACGTAAAGCTTCTTTA27126143TGCAAAGATAGGTAGATATATGCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
Malus x robusta genome assembly, chromosome: 16.
OY720340.1:26588975-26588999
TTAGTGGAGTATAAACGTAAAGCTTCTTTA26588975TGCAAAGATAGGTAGATATATGCCATCCCTCTCTCTCTCTCTCTCTCTCTCTCTC
Pyrus communis genome assembly, chromosome: 15.
OY757082.1:21361809-21361833
TTAGTGGAGTATACACGTAAAGCTTCTTTA21361809TGCAAAGATAGGTAGATATATGCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCGC
Mdlv4-4042H19_e28726.b1 Mdlv4 Malus domestica cDNA 3', mRNA sequence.
GO577753.1:497-521
CTGCTGAAGAGAGAGAGAGAGAGAGAGAGA497TGGCATATATCTACCTATCTTTGCATAAAGAAGCTTTACGTTTATACTCCACTAA
Malus hybrid cultivar cultivar Flame chromosome 8.
CP141917.1:3768852-3768876
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA3768852TGGCATATATCTACCTATCTTTGCATAAAGAAGCTTTACGTTTATACTCCAATGA
Malus hybrid cultivar cultivar Flame chromosome 8.
CP141934.1:3968140-3968164
CTGCTGAAGAGAGAGAGAGAGAGAGAGAGA3968140TGGCATATATCTACCTATCTTTGCATAAAGAAGCTTTACGTTTATACTCCACTAA
Malus hybrid cultivar cultivar Royalty chromosome 8.
CP141960.1:4025710-4025734
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA4025710TGGCATATATCTACCTATCTTTGCATAAAGAAGCTTTACGTTTATACTCCACTAA
Malus hybrid cultivar cultivar Royalty chromosome 8.
CP141977.1:3841310-3841334
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA3841310TGGCATATATCTACCTATCTTTGCATAAAGAAGCTTTACGTTTATACTCCACAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGCAAAGATAGGTAGATATATGCCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGCAAAGATAGGTAGATATATGCCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.093 | 0.084 | search_plus_done; http://172.18.8.135:50400/match?q=TGCAAAGATAGGTAGATATATGCCA&k=0&no_gap=0&offset=0&limit=50
0.203 | 0.110 | search_minus_done; http://172.18.8.135:50400/match?q=TGGCATATATCTACCTATCTTTGCA&k=0&no_gap=0&offset=0&limit=41
0.206 | 0.004 | cgi_end;

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