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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 20:59:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Cervus elaphus genome assembly, chromosome: 30.
OU343107.1:11942199-11942218
CCCCGGAAGCCTGGGCCACACTTCATAACC11942199TGCACAAGCCACTTCTCAACTGTTGCCTGACTTGTCTCTGCTGTTTAGAT
Muntiacus reevesi genome assembly, chromosome: 11.
OZ005635.1:9862298-9862317
CCCCGGAAGCCTGGGCCACACTTCATAACC9862298TGCACAAGCCACTTCTCAACTGTTGCCTGACTTGTCTCTGCCGTTTAGAT
TSA: Raphanus sativus RS26161 mRNA sequence.
JT810708.1:634-653
CTCCAACATTGATAATTCACATGCTGCAAC634TGCACAAGCCACTTCTCAACTCAGAAAAGCATCTAAAACTCAAAGAGCAA
Thlaspi arvense genome assembly, chromosome: 6.
OU466862.2:64184461-64184480
CTCTAACATTGATAATTCACATGCTGCGAC64184461TGCACAAGCCACTTCTCAACTCAGAAAAGCATCTAAAACTCAAAGAGCAA
Raphanus sativus genome assembly, chromosome: 7.
OY743213.1:2372444-2372463
CTCCAACATTGATAATTCACATGCTGCAAC2372444TGCACAAGCCACTTCTCAACTCAGAAAAGCATCTAAAACTCAAAGAGCAA
Spongilla lacustris genome assembly, chromosome: 19.
OX442433.1:2123712-2123731
TTTTAATGTAATGCCTTTTGGCTTGTGGAA2123712TGCACAAGCCACTTCTCAACAACTCATGGACCTTGTGATGGCAGGCTTAC
Raphanus sativus mRNA, clone: RSCS06G20, 5' end sequence.
FY448059.1:323-342
TTGCTCTTTGAGTTTTAGATGCTTTTCTGA323GTTGAGAAGTGGCTTGTGCAGTTGCAGCATGTGAATTATCAATGTTGGAG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_31765.
FX748368.1:72-91
TTGCTCTTTGAGTTTTAGATGCTTTTCTGA72GTTGAGAAGTGGCTTGTGCAGTTGCAGCATGTGAATTATCAATGTTGGAG
Raphanus sativus genome assembly, chromosome: 8.
LR778317.1:30606938-30606957
TTGCTCTTTGAGTTTTAGATGCTTTTCTGA30606938GTTGAGAAGTGGCTTGTGCAGTTGCAGCATGTGAATTATCAATGTTGGAG
Nomada lathburiana genome assembly, chromosome: 6.
OY763902.1:6371315-6371334
GGAGGCAGAGAAAAAGGAAAAGAAGAAGGG6371315GTTGAGAAGTGGCTTGTGCAGTCGAGGCCAGGTAAACGGATCGACGGATC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGCACAAGCCACTTcTCAAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGCACAAGCCACTTcTCAAC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.194 | 0.185 | search_plus_done; http://172.18.8.135:50400/match?q=TGCACAAGCCACTTCTCAAC&k=0&no_gap=0&offset=0&limit=50
0.404 | 0.210 | search_minus_done; http://172.18.8.135:50400/match?q=GTTGAGAAGTGGCTTGTGCA&k=0&no_gap=0&offset=0&limit=44
0.406 | 0.003 | cgi_end;

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