GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 09:34:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38782849-38782868
TCTCTCTCTCTCTCTGTGCGCGGTTTTTAT38782849TGCACTTGGTGATTTGCTACGCACTTATAATAAGTGGGGTGCCTTATTAA
Pyrus communis genome assembly, chromosome: 8.
OY757075.1:25724082-25724101
TCTCTCTCTCTCTCTCTCTGCGGTTTTTAT25724082TGCACTTGGTGATTTGCTACGCACTTATAATAAGTGGGGTGCCCTATTAA
Mdfrjg3504E12_e7098.g1 Apple_EST_Mdfrjg Malus domestica cDNA 5', mRNA sequence.
GO542711.1:54-73
TTAATAAGGCACCCCACTTATTATAAGTGC54GTAGCAAATCACCAAGTGCAATAAAAACCGCGCACAGACACAGAGAGAGA
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:2370688-2370707
TTAATAAGGCACCCCACTTATTATAAGTGC2370688GTAGCAAATCACCAAGTGCAATAAAAACCGCGCACAGAGAGAGAGAGAGA
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2310855-2310874
TTAATAAGGCACCCCACTTATTATAAGTGC2310855GTAGCAAATCACCAAGTGCAATAAAAATCGCGCACAGAGAGAGAGAGAGA
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2333020-2333039
TTAATAAGGCACCCCACTTATTATAAGTGC2333020GTAGCAAATCACCAAGTGCAATAAAAATCGCGCACAGAGAGAGAGAGAGA
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:2428116-2428135
TTAATAAGGCACCCCACTTATTATAAGTGC2428116GTAGCAAATCACCAAGTGCAATAAAAATCGCGCACAGAGAGAGAGAGAGA
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:2532732-2532751
GAGGTTGGGATCATTCATTATTATAAGTGC2532732GTAGCAAATCACCAAGTGCAATAAGAACCGCGCACAGAGAGAGAGAGACA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2319703-2319722
TTAATAAGGCACCCCACTTATTATAAGTGC2319703GTAGCAAATCACCAAGTGCAATAAAAATCGCGCACAGAGAGAGAGAGAGA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:2405689-2405708
TTAATAAGGCACCCCACTTATTATAAGTGC2405689GTAGCAAATCACCAAGTGCAATAAAAACCGCGCACACAGAGAGAGAGAGA
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2492979-2492998
TTAATAAGGCACCCCACTTATTATAAGTGC2492979GTAGCAAATCACCAAGTGCAATAAAAATCGCGCACAGAGAGAGAGAGAGA
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2485597-2485616
TTAATAAGGCACCCCACTTATTATAAGTGC2485597GTAGCAAATCACCAAGTGCAATAAAAATCGCGCACAGAGAGAGAGAGAGA
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2541316-2541335
TTAATAAGGCACCCCACTTATTATAAGTGC2541316GTAGCAAATCACCAAGTGCAATAAAAATCGCGCACAGAGAGAGAGAGAGA
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2576913-2576932
TTAATAAGGCACCCCACTTATTATAAGTGC2576913GTAGCAAATCACCAAGTGCAATAAAAATCGCGCACAGAGAGAGAGAGAGA
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2540453-2540472
TTAATAAGGCACCCCACTTATTATAAGTGC2540453GTAGCAAATCACCAAGTGCAATAAAAATCGCGCACAGAGAGAGAGAGAGA
Octopus vulgaris genome assembly, chromosome: 11.
OX597824.1:15289537-15289556
TGCTCTTCCAAATCCGATATAGTTCAAATT15289537GTAGCAAATCACCAAGTGCATAAAAACACATTCCCTCATGTAGATCGATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGCACTTGGTGATTTGCTAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGCACTTGGTGATTTGCTAC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.092 | 0.084 | search_plus_done; http://172.18.8.135:50400/match?q=TGCACTTGGTGATTTGCTAC&k=0&no_gap=0&offset=0&limit=50
0.209 | 0.117 | search_minus_done; http://172.18.8.135:50400/match?q=GTAGCAAATCACCAAGTGCA&k=0&no_gap=0&offset=0&limit=48
0.218 | 0.009 | cgi_end;

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