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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-20 08:05:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sus scrofa scrofa breed NS chromosome 10.
CP071561.1:49637079-49637098
CTTACTGGGGACTCCTGATTTTTTGTGTGC49637079TGCAGAAAGCAGCAGAGGCTTGACAGGCTCCTATTGTTATCTTGAGCTGC
Sus scrofa genome assembly, chromosome: 10.
OY997217.1:67000997-67001016
CTTACTGGGGACTCCTGATTTTTTGTGTGC67000997TGCAGAAAGCAGCAGAGGCTTGACAGGCTCCTATTGTTATCTTGAGCTGC
Sequence 39 from Patent WO2013096562.
JB750644.1:2985-3004
AATAATGAATTGTGCGACAAATTACAAACT2985TGCAGAAAGCAGCAGAGGCTTTCCTTCCAGCTCTTGAATCCAAAGAAGGA
Sequence 39 from patent US 10036030.
MI927067.1:2985-3004
AATAATGAATTGTGCGACAAATTACAAACT2985TGCAGAAAGCAGCAGAGGCTTTCCTTCCAGCTCTTGAATCCAAAGAAGGA
Sequence 39 from patent US 10876128.
MX173739.1:2985-3004
AATAATGAATTGTGCGACAAATTACAAACT2985TGCAGAAAGCAGCAGAGGCTTTCCTTCCAGCTCTTGAATCCAAAGAAGGA
Sequence 39 from patent US 11319549.
OO148815.1:2985-3004
AATAATGAATTGTGCGACAAATTACAAACT2985TGCAGAAAGCAGCAGAGGCTTTCCTTCCAGCTCTTGAATCCAAAGAAGGA
AdH1032-CPY2-L6TR AdH1 Arachis duranensis genomic clone AdH1032-CPY2-L6, genomic survey sequence.
FI292956.1:126-145
AATGAAATAATATAGGATAACTAAATAATT126TGCAGAAAGCAGCAGAGGCTTTTCTTCCTCCTCTTGAATCAAAGGAAGGA
Glycine max cultivar Williams 82 chromosome 19.
CP126444.1:37862604-37862623
AATAATGAATTGTGCGACAAATTACAAACT37862604TGCAGAAAGCAGCAGAGGCTTTCCTTCCAGCTCTTGAATCCAAAGAAGGA
Trifolium dubium genome assembly, chromosome: 4.
OX638065.1:40827017-40827036
ATCATAATCCTATAATAAACTTATTATAAC40827017TGCAGAAAGCAGCAGAGGCTTTCCTTCCTGCCCTCGAATCGAAGGAAGGA
Trifolium dubium genome assembly, chromosome: 11.
OX638072.1:28514358-28514377
ATCATAATCCTATAATAAACTTATTATAAC28514358TGCAGAAAGCAGCAGAGGCTTTCCTTCCGGCCCTCGAATCGAAGGAAGGA
Onychomys torridus genome assembly, chromosome: 15.
LR877202.1:22055606-22055625
ATGGACAAACCTACCAGCTCCGAAGGTTGC22055606AGCCTCTGCTGCTTTCTGCATTTATTTCCATTTCTTAGCTTTTCCTGGCC
Onychomys torridus genome assembly, chromosome: 15.
OX460896.1:22055606-22055625
ATGGACAAACCTACCAGCTCCGAAGGTTGC22055606AGCCTCTGCTGCTTTCTGCATTTATTTCCATTTCTTAGCTTTTCCTGGCC
Scleropages formosus genome assembly, chromosome: 7.
LR584072.1:12042830-12042849
AGCACAACAGCACAATAGAGATTGTTGTGT12042830AGCCTCTGCTGCTTTCTGCATCATGAGTCCCGGTTTAATGTGGTCTTCAC
Acrocephalus scirpaceus scirpaceus genome assembly, chromosome: 14.
OU383787.1:10813189-10813208
CCCATTCAGGTCACCAGCCCTGACTGTGAC10813189AGCCTCTGCTGCTTTCTGCAGTTGGCCAGGCAAGACTGATCTGGGGAGGA
Meleagris gallopavo genome assembly, chromosome: 7.
OW982259.1:28357277-28357296
AATGTCTTGTTAAAATAACCATTCTAGGAG28357277AGCCTCTGCTGCTTTCTGCACCAAAGTCAGGGTGGGAATCACTGCAGACC
Meleagris gallopavo genome assembly, chromosome: 7.
OW982298.1:28983568-28983587
AATGTCTTGTTAAAATAACCATTCTAGGAG28983568AGCCTCTGCTGCTTTCTGCACCAAAGTCAGGGTGGGAATCACTGCAGACC
Zootoca vivipara genome assembly, chromosome: 11.
OY735912.1:30282758-30282777
TTCGTCATTACATTCTTATGAATCTGCAAC30282758AGCCTCTGCTGCTTTCTGCACTTGAAATGGTTAAGCAACAATATTATACA
Sus scrofa genomic clone PigE-196N14, genomic survey sequence.
CT072797.1:42-61
AGGCAGCTCAGATAACAATAGGAGCCTGTC42AGCCTCTGCTGCTTTCTGCAGCACACAAAAAATCAGGAGTCCCCAGTAAG
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-422O9.
FP089500.2:105548-105567
GCAGCTCAAGATAACAATAGGAGCCTGTCA105548AGCCTCTGCTGCTTTCTGCAGCACACAAAAAATCAGGAGTCCCCAGTAAG
Medicago truncatula chromosome 7 clone mth2-19e15, complete sequence.
AC149131.3:105427-105446
TCCTTCCTTCGACTCAAGGACAGGAAGGAA105427AGCCTCTGCTGCTTTCTGCAAGTTATAATAAATTTATTATATTATAAGGT
Arachis hypogaea cultivar Shitouqi chromosome A06.
CP030988.1:99152041-99152060
TCCTTCCTTTGATTCAAGAGGAGGAAGAAA99152041AGCCTCTGCTGCTTTCTGCAAATTATTTAGTTATCCTATATTATTTCATT
Arachis hypogaea cultivar Shitouqi chromosome B06.
CP030998.1:126892486-126892505
TCCTTCCTTTGATTCAAGAGGAGGAAGGAA126892486AGCCTCTGCTGCTTTCTGCAAATTATTTAGTTATCCTATATTATTTCATT
Arachis ipaensis cultivar K30076 chromosome 06.
CP049897.1:125977583-125977602
TCCTTCCTTTGATTCAAGAGGAGGAAGGAA125977583AGCCTCTGCTGCTTTCTGCAAATTATTTAGTTATCCTATATTATTTCATT
Glycine max cultivar Williams 82 chromosome 16.
CP126441.1:4799996-4800015
TCCTTCTTTGGATTCAAGAGCTGGAAGGAA4799996AGCCTCTGCTGCTTTCTGCAAGTTTATAATTTGTTGCGCAATTCATTATT
Trifolium subterraneum genome assembly, chromosome: 8.
OX637468.1:18606521-18606540
TCCTTCCTTTGACTCAAGGGCAGGAAGAAA18606521AGCCTCTGCTGCTTTCTGCAGTTATAATAATTACTATAAAATTATGATGC
Medicago lupulina genome assembly, chromosome: 2.
OY283140.1:16342115-16342134
TCCTTCCTTTGACTCAAGGACAGGAAGGAA16342115AGCCTCTGCTGCTTTCTGCAAGTTATAATAAATTTATTATATTATAAGGT
Inga oerstediana genome assembly, chromosome: 5.
OY723403.1:11857196-11857215
TCCTTCTTTCGACTCAAGGATAGGAAGGAA11857196AGCCTCTGCTGCTTTCTGCAAATTTGGATTAGTTGCCTACTATTTATCAA
Inga laurina genome assembly, chromosome: 8.
OY979708.1:11592320-11592339
TCCTTCTTTAGACTCAAGGATAGGAAGGAA11592320AGCCTCTGCTGCTTTCTGCAAATTTGGATTAGTTGCCTACTATTTATCAA
Brucella sp. 458 chromosome 2, complete sequence.
CP072547.1:173384-173403
AATTTCTATGTCGAAATCTTCCGGCCCAAG173384AGCCTCTGCTGCTTTCTGCACGAGCACGGAGAGGAGATTGACGCCGAGGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGCAGAAAGCAGCAGAGGCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGCAGAAAGCAGCAGAGGCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.335 | 0.326 | search_plus_done; http://172.18.8.135:50400/match?q=TGCAGAAAGCAGCAGAGGCT&k=0&no_gap=0&offset=0&limit=50
0.408 | 0.073 | search_minus_done; http://172.18.8.135:50400/match?q=AGCCTCTGCTGCTTTCTGCA&k=0&no_gap=0&offset=0&limit=40
0.420 | 0.012 | cgi_end;

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