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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 08:40:28, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

zfi01-10ms1-a08 Zfi01 Zamia fischeri cDNA clone zfi01-10ms1-a08 5', mRNA sequence.
CV009144.1:120-141
ATCAGATCGATAGGCTTATGATGTCTCGTG120TGCAGACACATTCGAACAAACATTCTGAAAAATGGGAATTGCAACAAGAAGA
Brassica oleracea var. viridis mRNA, clone: KALE-063H17, 3' end sequence.
DK539412.1:61-82
ATCAGATCGATAGGCTTATGATGTCTCGTG61TGCAGACACATTCGAACAAACATTTGAAAAATGGGAATTGCAACAGAGAGAA
Brassica oleracea var. viridis mRNA, clone: KALE-109O10, 3' end sequence.
DK557157.1:113-134
ATCAGATCGATAGGCTTATGATGTCTCGTG113TGCAGACACATTCGAACAAACATTCTGAAAAATGGGAATTGCAACAAGAAGA
JKBNM5_T7_009_C08_30JUN2004_060 JKBNM5 Brassica napus cDNA 3', mRNA sequence.
ES271555.1:124-145
ATCAGATCGATAGGCTTATGATGTCTCGTG124TGCAGACACATTCGAACAAACATTCTGAAAAATGGGAATTGCAACAAGAAGA
BNAPO4GH_T3_034_G03_20JULY2007_019 BNAPO4GH Brassica napus cDNA 5', mRNA sequence.
GR461707.1:54-75
ATCAGATCGATAGGCTTATGATGTCTCGTG54TGCAGACACATTCGAACAAACATTCTGAAAAATGGGAATTGCAACAAGAAGA
Brassica rapa subsp. pekinensis clone KBrB041F20, complete sequence.
CU984550.1:116728-116749
ATCAGATCGATAGGCTCATGATGTCTCGTG116728TGCAGACACATTCGAACAAACATTCTGAAAAATGGGAATTGCAACATGAAGA
Brassica napus genome assembly, chromosome: A08.
HG994362.1:12621165-12621186
ATCAGATCGATAGGCTCATGATGTCTCGTG12621165TGCAGACACATTCGAACAAACATTCTGAAAAATGGGAATTGCAAGAAGAAGA
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:19438841-19438862
ATCAGATCGATAGGCTTATGATGTCTCGTG19438841TGCAGACACATTCGAACAAACATTCTGAAAAATGGGAATTGCAACAAGAAGA
Clistopyga incitator genome assembly, chromosome: 1.
OX382171.1:10251471-10251492
GAAAACATTTCTAGAGTATGAAAAAACTGG10251471TGCAGACACATTCGAACAAACATCAAAACTCTCACTGTCAGATACAGATAAT
Diplazon laetatorius genome assembly, chromosome: 6.
OY759157.1:3521035-3521056
TATCGAATATGAAAAAAAAAAGGCAACTGG3521035TGCAGACACATTCGAACAAACATCAAAACTCTCACTGTCAGATACAGTCGTT
Pimpla rufipes genome assembly, chromosome: 2.
OZ010631.1:4019407-4019428
GAAAACATTTCTAGAGTATGAAAAAACTGG4019407TGCAGACACATTCGAACAAACATCAAAACTCTCACTGTCAGATACAGATAAT
Sequence 110 from Patent WO2012088289.
JA817773.1:513-534
TCTTCATGTTGCAATTCCCATTTTTCAGAA513TGTTTGTTCGAATGTGTCTGCACACGAGACATCATGAGCCTATCGATCTGAT
Sequence 110 from patent US 9702013.
KH919300.1:513-534
TCTTCATGTTGCAATTCCCATTTTTCAGAA513TGTTTGTTCGAATGTGTCTGCACACGAGACATCATGAGCCTATCGATCTGAT
Sequence 110 from patent US 10590490.
MO959577.1:513-534
TCTTCATGTTGCAATTCCCATTTTTCAGAA513TGTTTGTTCGAATGTGTCTGCACACGAGACATCATGAGCCTATCGATCTGAT
Brassica rapa subsp. pekinensis clone KBrH035H17, complete sequence.
CU695296.1:72340-72361
TCTTCATGTTGCAATTCCCATTTTTCAGAA72340TGTTTGTTCGAATGTGTCTGCACACGAGACATCATGAGCCTATCGATCTGAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB053L06, complete sequence.
AC189390.2:54055-54076
TCTTCATGTTGCAATTCCCATTTTTCAGAA54055TGTTTGTTCGAATGTGTCTGCACACGAGACATCATGAGCCTATCGATCTGAT
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:32724754-32724775
TCTTCTTGTTGCAATTCCCATTTTTCAGAA32724754TGTTTGTTCGAATGTGTCTGCACACGAGACATCATAAGCCTATCGATCTGAT
Tromatobia lineatoria genome assembly, chromosome: 1.
OX453034.1:26282295-26282316
ATTATCTGTATCTGACAGTGAGAGTTTTGA26282295TGTTTGTTCGAATGTGTCTGCACCAGTTTTTGATACTCTAGAAATGTTTTCA
Hydrotaea diabolus genome assembly, chromosome: 2.
OY740717.1:27356597-27356618
TTTAGCCATTGTTGGACAATGATAATTGTT27356597TGTTTGTTCGAATGTGTCTGCAAGGCAAGGTAAGACCAAAAAAGAGCACGCA
Cylloceria caligata genome assembly, chromosome: 8.
OZ012710.1:2057689-2057710
ATTATCTGTATCTGACAGTGAGAGTTTTGA2057689TGTTTGTTCGAATGTGTCTGCACCAGTTTTTGATAATCTAGAAATGTTTTCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGCAGACACATTCGAACAAACA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGCAGACACATTCGAACAAACA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.336 | 0.327 | search_plus_done; http://172.18.8.135:50400/match?q=TGCAGACACATTCGAACAAACA&k=0&no_gap=0&offset=0&limit=50
0.504 | 0.168 | search_minus_done; http://172.18.8.135:50400/match?q=TGTTTGTTCGAATGTGTCTGCA&k=0&no_gap=0&offset=0&limit=39
0.510 | 0.006 | cgi_end;

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