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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 20:36:21, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

CGN-16051 Pericarp Coffea canephora cDNA clone cccp6m17 5', mRNA sequence.
DV678322.1:272-295
AGCAGCAGCAGCAGCAACAACGAGCATTGA272TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
CGN-21199 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w24c1 5', mRNA sequence.
DV681776.1:124-147
AGCAGCAGCAGCAGCAACAACAAGCATTGA124TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGTCTA
CGN-23750 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w24c1 5', mRNA sequence.
DV683370.1:139-162
AGCAGCAGCAGCAGCAACAACAAGCATTGA139TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
CGN-24087 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w24c1 5', mRNA sequence.
DV683577.1:98-121
AGCAGCAGCAGCAGCAACAACAAGCATTGA98TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
CGN-34394 Leaf Coffea canephora cDNA clone cccl16d20 5', mRNA sequence.
DV690872.1:264-287
AGCAGCAGCAGCAGCAACAACAAGCATTGA264TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTTTTATAGAGCCTA
CGN-45419 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w15n8 5', mRNA sequence.
DV699576.1:54-77
AGCAGCAGCAGCAGCAACAACAAGCATTGA54TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
CGN-50721 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w29j9 5', mRNA sequence.
DV704033.1:54-77
AGCAGCAGCAGCAGCAACAACAAGCATTGA54TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
TransId-228543 CACATN1 Coffea arabica cDNA clone CACATN1-9151TV similar to Oligouridylate binding protein - Nicotiana plumbaginifolia (Leadwort-leaved tobacco), mRNA sequence.
GR993575.1:324-347
AGCAGCAGCAGCAGCAACAACAAGCATTGA324TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
TransId-228395 CACATN1 Coffea arabica cDNA clone CACATN1-8Z80TV similar to Oligouridylate binding protein - Nicotiana plumbaginifolia (Leadwort-leaved tobacco), mRNA sequence.
GR993631.1:312-335
AGCAGCAGCAGCAGCAGCAACAAGCATTGA312TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
TransId-218830 CACATN1 Coffea arabica cDNA clone CACATN1-5V72TV similar to Oligouridylate binding protein - Nicotiana plumbaginifolia (Leadwort-leaved tobacco), mRNA sequence.
GR997733.1:324-347
AGCAGCAGCAGCAGCAACAACAAGCATTGA324TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
TransId-211557 CACATN1 Coffea arabica cDNA clone CACATN1-3K67TV similar to Oligouridylate binding protein - Nicotiana plumbaginifolia (Leadwort-leaved tobacco), mRNA sequence.
GT000853.1:328-351
AGCAGCAGCAGCAGCAACAACAAGCATTGA328TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
TransId-246653 CACAT36FR31 Coffea arabica cDNA clone CACAT36FR31-CAFSD21TV similar to Oligouridylate binding protein - Nicotiana plumbaginifolia (Leadwort-leaved tobacco), mRNA sequence.
GT012258.1:317-340
AGCAGCAGCAGCAGCAACAACAAGCATTGA317TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
TransId-275351 CarCatLeEnri2 Coffea arabica cDNA clone CarCatLeEnri2_75-C08-PAL17d similar to Oligouridylate binding protein - Nicotiana plumbaginifolia (Leadwort-leaved tobacco), mRNA sequence.
GT018871.1:322-345
AGCAGCAGCAGCAGCAACAACAAGCATTGA322TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
CC00-XX-SH3-016-G08-EM.F Coffea canephora SH3 Coffea canephora cDNA clone CC00-XX-SH3-016-G08-EM, mRNA sequence.
GT646727.1:58-81
AGCAGCAGCAGCAGCAACAACAAGCATTGA58TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
CC00-XX-EC1-060-F04-EC.F Coffea canephora EC1 Coffea canephora cDNA clone CC00-XX-EC1-060-F04-EC, mRNA sequence.
GT652897.1:58-81
AGCAGCAGCAGCAGCAACAACAAGCATTGA58TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
CC00-XX-EC1-054-B06-EC.F Coffea canephora EC1 Coffea canephora cDNA clone CC00-XX-EC1-054-B06-EC, mRNA sequence.
GT652898.1:58-81
AGCAGCAGCAGCAGCAACAACAAGCATTGA58TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
CR00-XX-FR4-029-E08-QH.F Coffea racemosa FR4 Coffea racemosa cDNA clone CR00-XX-FR4-029-E08-QH, mRNA sequence.
GT660755.1:88-111
AGCAGCAGCAGCAGCAACAACAAGCATTGA88TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCACACTCAGATAGAGCCTA
CA00-XX-LP1-012-C03-EB.F Coffea arabica LP1 Coffea arabica cDNA clone CA00-XX-LP1-012-C03-EB, mRNA sequence.
GT672151.1:58-81
AGCAGCAGCAGCAGCAACAACAAGCATTGA58TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
CA00-XX-CA1-015-G07-EQ.F Coffea arabica CA1 Coffea arabica cDNA clone CA00-XX-CA1-015-G07-EQ, mRNA sequence.
GT688171.1:148-171
AGCAGCAGCAGCAGCAACAACAAGCATTGA148TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
CA00-XX-LV4-074-F01-JM.F Coffea arabica LV4 Coffea arabica cDNA clone CA00-XX-LV4-074-F01-JM, mRNA sequence.
GT693896.1:144-167
AGCAGCAGCAGCAGCAACAACAAGCATTGA144TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
CA00-XX-LV5-076-D05-AG.F Coffea arabica LV5 Coffea arabica cDNA clone CA00-XX-LV5-076-D05-AG, mRNA sequence.
GT697055.1:58-81
AGCAGCAGCAGCAGCAACAACAAGCATTGA58TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
CA00-XX-LV5-052-B05-BF.F Coffea arabica LV5 Coffea arabica cDNA clone CA00-XX-LV5-052-B05-BF, mRNA sequence.
GT697056.1:58-81
AGCAGCAGCAGCAGCAACAACAAGCATTGA58TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
CA00-XX-LV5-021-G08-MC.F Coffea arabica LV5 Coffea arabica cDNA clone CA00-XX-LV5-021-G08-MC, mRNA sequence.
GT697057.1:58-81
AGCAGCAGCAGCAGCAACAACAAGCATTGA58TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
CA00-XX-LV8-088-A05-CB.F Coffea arabica LV8 Coffea arabica cDNA clone CA00-XX-LV8-088-A05-CB, mRNA sequence.
GT700285.1:170-193
AGCAGCAGCAGCAGCAACAACAAGCATTGA170TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
CA00-XX-FR2-004-G04-MC.F Coffea arabica FR2 Coffea arabica cDNA clone CA00-XX-FR2-004-G04-MC, mRNA sequence.
GT705780.1:144-167
AGCAGCAGCAGCAGCAACAACAAGCATTGA144TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
CA00-XX-FR2-004-F08-MC.F Coffea arabica FR2 Coffea arabica cDNA clone CA00-XX-FR2-004-F08-MC, mRNA sequence.
GT705781.1:144-167
AGCAGCAGCAGCAGCAACAACAAGCATTGA144TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
CA00-XX-FB1-008-G10-QH.F Coffea arabica FB1 Coffea arabica cDNA clone CA00-XX-FB1-008-G10-QH, mRNA sequence.
GT708915.1:37-60
AGCAGCAGCAGCAGCAACAACAAGCATTGA37TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
CA00-XX-LV9-022-G09-EZ.F Coffea arabica LV9 Coffea arabica cDNA clone CA00-XX-LV9-022-G09-EZ, mRNA sequence.
GT711708.1:58-81
AGCAGCAGCAGCAGCAACAACAAGCATTGA58TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
CA00-XX-SH2-016-A01-EM.F Coffea arabica SH2 Coffea arabica cDNA clone CA00-XX-SH2-016-A01-EM, mRNA sequence.
GT717218.1:58-81
AGCAGCAGCAGCAGCAACAACAAGCATTGA58TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
CA00-XX-SI3-053-C04-EM.F Coffea arabica SI3 Coffea arabica cDNA clone CA00-XX-SI3-053-C04-EM, mRNA sequence.
GT719464.1:144-167
AGCAGCAGCAGCAGCAACAACAAGCATTGA144TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
CA00-XX-BP1-060-A01-EP.F Coffea arabica BP1 Coffea arabica cDNA clone CA00-XX-BP1-060-A01-EP, mRNA sequence.
GT722014.1:58-81
AGCAGCAGCAGCAGCAACAACAAGCATTGA58TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
CA00-XX-RX1-043-E11-EB.F Coffea arabica RX1 Coffea arabica cDNA clone CA00-XX-RX1-043-E11-EB, mRNA sequence.
GT730044.1:144-167
AGCAGCAGCAGCAGCAACAACAAGCATTGA144TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
CA00-XX-RX1-051-E11-EB.F Coffea arabica RX1 Coffea arabica cDNA clone CA00-XX-RX1-051-E11-EB, mRNA sequence.
GT730045.1:58-81
AGCAGCAGCAGCAGCAACAACAAGCATTGA58TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
CA00-XX-IC1-013-A05-EC.F Coffea arabica IC1 Coffea arabica cDNA clone CA00-XX-IC1-013-A05-EC, mRNA sequence.
GT731443.1:144-167
AGCAGCAGCAGCAGCAACAACAAGCATTGA144TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
CA00-XX-CB1-027-H07-BM.F Coffea arabica CB1 Coffea arabica cDNA clone CA00-XX-CB1-027-H07-BM, mRNA sequence.
GT733303.1:58-81
AGCAGCAGCAGCAGCAACAACAAGCATTGA58TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
CA00-XX-CB1-009-F03-EZ.F Coffea arabica CB1 Coffea arabica cDNA clone CA00-XX-CB1-009-F03-EZ, mRNA sequence.
GT733304.1:58-81
AGCAGCAGCAGCAGCAACAACAAGCATTGA58TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATAGAGCCTA
CA00-XX-CB1-043-C03-RF.F Coffea arabica CB1 Coffea arabica cDNA clone CA00-XX-CB1-043-C03-RF, mRNA sequence.
GT733305.1:10-33
AAGCATTCA10TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGATATGTTGGG
AFP0ABA81YO11RM1 BAC end, cultivar HD200-94 of Coffea canephora, genomic survey sequence.
FO656910.1:333-356
AGCAGCAGCAGCAGCAACAACAAGCATTGA333TGCAGCAATCTCTCTACCACCCGGGTCTTTTAGCTCATACTCAGGTCTTTCTAT
CA-H12_02_C08 Coffee SSH library 1 Coffea arabica cDNA, mRNA sequence.
CF588663.1:68-91
TAGGCTCTATCTGAGTATGAGCTAAAAGAC68CCGGGTGGTAGAGAGATTGCTGCATCAATGCTTGTTGTTGCTGCTGCTGCTGCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGCAGCAATCTCTCTACCACCCGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGCAGCAATCTCTCTACCACCCGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.798 | 2.789 | search_plus_done; http://172.18.8.135:50400/match?q=TGCAGCAATCTCTCTACCACCCGG&k=0&no_gap=0&offset=0&limit=50
2.867 | 0.069 | search_minus_done; http://172.18.8.135:50400/match?q=CCGGGTGGTAGAGAGATTGCTGCA&k=0&no_gap=0&offset=0&limit=12
2.868 | 0.001 | cgi_end;

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