GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 18:03:21, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Pipistrellus pygmaeus genome assembly, chromosome: 1.
OX465302.1:15985033-15985050
TGGTTAGAGCATCATCCCATATGATGAGGC15985033TGCAGGATCAATTCCCTCTCAAGGCACATACAAGAATCAGCCAATGAA
Rhinatrema bivittatum genome assembly, chromosome: 2.
LR584388.1:413150326-413150343
TTTTAATCCTTCTCCTGATAGATCAAGTGC413150326TGCAGGATCAATTCCCTCATTGCTTGGGAGTCTTCACAGTATCTTGCA
Danio rerio strain Cooch Behar (CB) genome assembly, chromosome: 4.
LR812547.1:1817225-1817242
GTGCTGCACATTCGCCCTTGATCTGAGAGT1817225TGCAGGATCAATTCCCTCTTATAGATGAACTTCTACTAGTTTCACCAA
Fringilla coelebs genome assembly, chromosome: 3.
OY740726.1:100407120-100407137
GAAAGAAAAACAATATTTAGGCATCGTTTC100407120TGCAGGATCAATTCCCTCTCCTGCACAAATTCTTTTAAGTGCCTTGAA
Fringilla coelebs genome assembly, chromosome: 11.
OY740735.1:20805054-20805071
GGGCAAACAGAATTAATCCCCACTCACACG20805054TGCAGGATCAATTCCCTCTCCCAGCCCAGCTCTGCTTCCCTCTCTGAC
A025P36.3pR Hybrid aspen plasmid library Populus tremula x Populus tremuloides cDNA clone A025P36 3', mRNA sequence.
CK087892.1:523-540
GTTTGAGAGGAACTCAACTGCTGCTTGAGC523TGCAGGATCAATTCCCTCGCTCCTTGAGGACGAGAGCGCAACGCCATT
WS0221.B21_M21 PTxD-ICC-A-12 Populus trichocarpa x Populus deltoides cDNA clone WS0221_M21 3', mRNA sequence.
CV253395.1:424-441
GTTTGAGAGGAACTCAGCTGCTGCTTGAGC424TGCAGGATCAATTCCCTCGCTCCTTGAGGAGGAGAGCGCAACGCCATT
Populus nigra mRNA, clone: PnFL2-009_K02, 3'end.
DB894643.1:463-480
GTTTGAGAGGAACTCAGCTGCTGCTTGAGC463TGCAGGATCAATTCCCTCGCTCCTTGAGGAGGAGAGCGCAAC
T078A02.3pR Populus shoot meristem cDNA library Populus tremula x Populus tremuloides cDNA clone T078A02 3', mRNA sequence.
DN489775.1:352-369
GTTTGAGAGGAACTCACCTGCTGCTTGAGC352TGCAGGATCAATTCCCTCGCTCCTTGAGGACAAGAGCGCAACCCCATT
Quercus petraea EST, clone WZ0AQPAB1YO07CM1.
FN714239.1:446-463
GTTTGAGAGGAATTCTGCTGCTGCTTGAGC446TGCAGGATCAATTCCCTCGCCTCTTTCAGTGGGAAGAGTAACACCATT
TSA: Betula platyphylla Unigene40642_ya_RNA mRNA sequence.
JP708429.1:500-517
ATTCGAGAGGAATTCCGCTGCCGCTTGAGC500TGCAGGATCAATTCCCTCACCCCTGATAGTGGGAAGTGTAACACCATT
TSA: Hevea brasiliensis contig28934, mRNA sequence.
JT919563.1:586-603
GTTTGAGAGGTGCTCAGCTGCTGCCTGAGC586TGCAGGATCAATTCCCTCACCCCTTGAGTAGGGTAGTGCAGCACCATT
TSA: Hevea brasiliensis contig28932, mRNA sequence.
JT920039.1:575-592
GTGTGAGAGGTACTCAGCTGCTGCCTGAGC575TGCAGGATCAATTCCCTCACCCCTTTGAGTAGGTTAGTGCAGCACCAT
TSA: Hevea brasiliensis contig28933, mRNA sequence.
JT922198.1:586-603
GTTTGAGAGGTGCTCAGCTGCTGCCTGAGC586TGCAGGATCAATTCCCTCACCCCTTGAGTAGGGTAGTGCAGCACCATT
TSA: Hevea brasiliensis contig59644, mRNA sequence.
JT922292.1:586-603
GTTTGAGAGGTGCTCAGCTGCTGCCTGAGC586TGCAGGATCAATTCCCTCACCCCTTGAGTAGGGTAGTGCAGCACCATT
TSA: Hevea brasiliensis contig60091, mRNA sequence.
JT924685.1:586-603
GTTTGAGAGGTGCTCAGCTGCTGCCTGAGC586TGCAGGATCAATTCCCTCACCCCTTGAGTAGGGTAGTGCAGCACCATT
TSA: Hevea brasiliensis contig28928, mRNA sequence.
JT924717.1:586-603
GTTTGAGAGGTGCTCAGCTGCTGCCTGAGC586TGCAGGATCAATTCCCTCACCCCTTGAGTAGGGTAGTGCAGCACCATT
TSA: Hevea brasiliensis contig12592, mRNA sequence.
JT946275.1:586-603
GTTTGAGAGGTGCTCAGCTGCTGCCTGAGC586TGCAGGATCAATTCCCTCACCCCTTGAGTAGGGTAGTGCAGCACCATT
TSA: Hevea brasiliensis contig63636, mRNA sequence.
JT960028.1:586-603
GTTTGAGAGGTGCTCAGCTGCTGCCTGAGC586TGCAGGATCAATTCCCTCACCCCTTGAGTAGGGTAGTGCAGCACCATT
TSA: Hevea brasiliensis contig28929, mRNA sequence.
JT960518.1:575-592
GTGTGAGAGGTACTCAGCTGCTGCCTGAGC575TGCAGGATCAATTCCCTCACCCCTTTGAGTAGGTTAGTGCAGCACCAT
TSA: Betula platyphylla Unigene51149_All.Beplwood mRNA sequence.
KA210161.1:567-584
ATTCGAGAGGAATTCCGCTGCCGCTTGAGC567TGCAGGATCAATTCCCTCACCCCTGATAGTGGGAAGTGTAACACCATT
TSA: Corylus avellana CAV_001216.ca, mRNA sequence.
KA394874.1:358-375
ATTCGAGAGGAATTCTGCTGCCGCTTGAGC358TGCAGGATCAATTCCCTCACCCCTGATAGTGGGAAGTGTAACACCATT
Torulaspora delbrueckii strain NRRL Y-50541 chromosome 6 sequence.
CP011783.1:1165565-1165582
GTGACTCTCAGATATTGGGCTGCCCAGTAT1165565TGCAGGATCAATTCCCTCTCCACCTTCAGATATGTTTGAAGATGTGGA
Torulaspora delbrueckii strain COFT1 chromosome 5, complete sequence.
CP027651.1:913655-913672
GTGACTCTCAGATATTGGGCTGCCCAGTAT913655TGCAGGATCAATTCCCTCTCCACCTTCAGATATGTTTGAAGATGTGGA
Carpinus viminea chromosome 8.
CP054674.1:9116506-9116523
ATTCGAGAGGAATTCCGCTGCCGCTTGAGC9116506TGCAGGATCAATTCCCTCACCCCTGATAGTGGGAAGTGTAACACCATT
Quercus dentata isolate Qdleaves-2020 chromosome 2.
CP116445.1:520596-520613
GTTTGAGAGGAATTCTGCTGCTGCTTGAGC520596TGCAGGATCAATTCCCTCGCCTCTTTCAGTGGGAAGAGTAACACCATT
Corylus americana cultivar Rush chromosome 6.
CP125819.1:7785940-7785957
ATTCGAGAGGAATTCTGCTGCCGCTTGAGC7785940TGCAGGATCAATTCCCTCACCCCTGATAGTGGGAAGTGTAACACCATT
Corylus americana cultivar Winkler chromosome 6.
CP125830.1:6934236-6934253
ATTCGAGAGGAATTCTGCTGCCGCTTGAGC6934236TGCAGGATCAATTCCCTCACCCCTGATAGTGGGAAGTGTAACACCATT
Trifolium repens isolate ACLI19 chromosome 05_0cc.
CP125844.1:26512945-26512962
TTTCTTATTTGGGATTTTGTTGCATGCTGC26512945TGCAGGATCAATTCCCTCCTAGACTGAGAGACTTCAAAATCTTCAAAC
Torulaspora delbrueckii CBS 1146 chromosome 6, complete genome.
HE616747.1:911972-911989
GTGACTCTCAGATATTGGGCTGCCCAGTAT911972TGCAGGATCAATTCCCTCTCCACCTTCAGATATGTTTGAAGATGTGGA
Corylus avellana genome assembly, chromosome: ca6.
LR899428.1:7799308-7799325
ATTCGAGAGGAATTCTGCTGCCGCTTGAGC7799308TGCAGGATCAATTCCCTCACCCCTGATAGTGGGAAGTGTAACACCATT
Allium cepa genome assembly, chromosome: 1.
LR994629.1:194951849-194951866
GCTTATCTTTTTGTTGTCATAATACCAATT194951849TGCAGGATCAATTCCCTCGAAAGGTTCTGGTTGATAGGTCTAAAGATC
Quercus robur genome assembly, chromosome: 2.
OW028766.1:564535-564552
GTTTGAGAGGAATTCTGCTGCTGCTTGAGC564535TGCAGGATCAATTCCCTCGCCTCTTTCAGTGGGAAGAGTAACACCATT
Hibiscus tridactylites genome assembly, chromosome: 13.
OY288277.1:33109879-33109896
CCTTGAGAGGTACTCTGCTGCAGATTGAGC33109879TGCAGGATCAATTCCCTCCCCACACTTTTCACCAGTCAATTGATCACC
Mimumesa dahlbomi genome assembly, chromosome: 18.
OU824130.1:3216425-3216442
GCGGTGAGTCTCATGTGTTCTTTACGCCGC3216425TGCAGGATCAATTCCCTCTCGGACGAGGATTTGGAAAATCGACCGCCG
Peromyscus eremicus genome assembly, chromosome: 15.
OX460481.1:47817130-47817147
GTTAGATCCAATGACCTTCTGAGGTGGAAG47817130GAGGGAATTGATCCTGCAAATTGTCCTTTGACCTCCACTCTTGCACTG
Danio rerio strain T5D chromosome 4.
CP068738.1:2018997-2019014
GTTGGTGAAACGAGTGAAGTTCATCTATAA2018997GAGGGAATTGATCCTGCAACTCTCAGATCAAGGGCGAATGTGCAGCAC
Danio rerio strain Tubingen chromosome 4.
CP137041.2:2204556-2204573
TTGGTGAAACGAGTAGAAGTTCATCTATAA2204556GAGGGAATTGATCCTGCAACTCTCAGATCAAGGGCGAATGTGCAGCAC
Zebrafish DNA sequence from clone CH73-223F1 in linkage group 4.
CU571163.10:77588-77605
TTGGTGAAACGAGTAGAAGTTCATCTATAA77588GAGGGAATTGATCCTGCAACTCTCAGATCAAGGGCGAATGTGCAGCAC
Danio rerio genome assembly, chromosome: 4.
LR812041.1:2215181-2215198
GTTGGTGAAACTAGTGAAGTTCATCTATAA2215181GAGGGAATTGATCCTGCAACTCTCAGATCAAGGGCGAATGTGCAGCCC
Danio rerio strain Nadia (NA) genome assembly, chromosome: 4.
LR812572.1:1968078-1968095
GTTGGTGAAACTAGTGAAGTTCATCTATAA1968078GAGGGAATTGATCCTGCAACTCTCAGATCAAGGGCGAATGTGCAGCCT
Danio rerio genome assembly, chromosome: 4.
LR812597.1:1909139-1909156
GTTGGTGAAACTAGTGAAGTTCATCTATAA1909139GAGGGAATTGATCCTGCAACTCTCAGATCAAGGGCGAATGTGCAGCCC
Zeus faber genome assembly, chromosome: 5.
OY482849.1:14908829-14908846
GCCACTGCTTAAAAGTACCCTTGACAGCGT14908829GAGGGAATTGATCCTGCAGAGCACAGTGCCCATGCTGGGACAGAAGGA
Populus euphratica EST, clone P0000400038E11F1.
AJ778038.1:661-678
AATGGCGTTGCGCTCTCCTCCTCTAGGAGC661GAGGGAATTGATCCTGCAGCTCAAGCAGCAGCTGAGTACCTCTCAAAC
T010G11 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence.
BU830617.1:131-148
AATGGCGTTGCGCTCTTGTCCTCAAGGAGC131GAGGGAATTGATCCTGCAGCTCAAGCAGCAGCTGAGTTCCTCTCAAAC
GQ0092.B3_A11 GQ009 Populus trichocarpa x Populus deltoides cDNA clone GQ0092_A11 5', mRNA sequence.
CN517862.1:196-213
AAGAATGGTGCGCTCTCCTCCTCAAGGAGC196GAGGGAATTGATCCTGCAGCTCAAGCAGCAGCTGAGTTCCTCTCAAAC
Y246F02 Hevea brasiliensis YLX600 library Hevea brasiliensis cDNA clone Y246F02 5', mRNA sequence.
JG000462.1:306-323
AATGGTGCTGCAGTTCCCTCCTCAAGGGGT306GAGGGAATTGATCCTGCAGCTCAGGCAGCAGCCGAATACCTCTCAAAC
TSA: Hevea brasiliensis Unigene10794_HB.Hebrbark mRNA sequence.
JR354974.1:147-164
AATGGTGCTGCAGTTCCCTCCTCAAGGGGT147GAGGGAATTGATCCTGCAGCTCAGGCAGCAGCCGAATACCTCTCAAAC
TSA: Hevea brasiliensis contig00177, mRNA sequence.
JT940019.1:734-751
AATGGTGCTGCAGTTCCCTCCTCAAGGGGT734GAGGGAATTGATCCTGCAGCTCAGGCAGCAGCCGAATACCTCTCAAAC
TSA: Betula platyphylla Unigene5983_All.Beplwood mRNA sequence.
KA245904.1:2109-2126
AATGGTGTTACACTTCCCACTATCAGGGGT2109GAGGGAATTGATCCTGCAGCTCAAGCGGCAGCGGAATTCCTCTCGAAT
TSA: Betula platyphylla Unigene5984_All.Beplwood mRNA sequence.
KA245905.1:2226-2243
AATGGTGTTACACTTCCCACTATCAGGGGT2226GAGGGAATTGATCCTGCAGCTCAAGCGGCAGCGGAATTCCTCTCGAAT
ORNL153 Poplar BAC Library Populus trichocarpa genomic similar to Abscisic acid insensitivity gene (ABI1), genomic survey sequence.
BH860820.1:592-609
AATGGCGTTGCGCTCTCCTCCTCAAGGAGC592GAGGGAATTGATCCTGCAGCTCAAGCAGCAGCTGAGTTCCTCTCAAAC
Populus tremula abi1B gene for abscisic insensitive 1B, isolate 13.1.
AM690392.1:2522-2539
AATGGCGTTGCGCTCTCGTCCTCAAGGAGC2522GAGGGAATTGATCCTGCAGCTCAAGCAGCAGCTGAGTTCCTCTCAAAC
Populus tremula abi1B gene for abscisic insensitive 1B, isolate 13.2.
AM690393.1:2525-2542
AATGGCGTTGCGCTCTCGTCCTCAAGGAGC2525GAGGGAATTGATCCTGCAGCTCAAGCAGCAGCTGAGTTCCTCTCAAAC
Populus tremula abi1B gene for abscisic insensitive 1B, isolate 17.2.
AM690394.1:2521-2538
AATGGCGTTGCGCTCTCGTCCTCAAGGAGC2521GAGGGAATTGATCCTGCAGCTCAAGCAGCAGCTGAGTTCCTCTCAAAC
Populus tremula abi1B gene for abscisic insensitive 1B, isolate 22.1.
AM690395.1:2519-2536
AATGGCGTTGCGCTCTCGTCCTCAAGGAGC2519GAGGGAATTGATCCTGCAGCTCAAGCAGCAGCTGAGTTCCTCTCAAAC
Populus tremula abi1B gene for abscisic insensitive 1B, isolate 22.2.
AM690396.1:2525-2542
AATGGCGTTGCGCTCTCGTCCTCAAGGAGC2525GAGGGAATTGATCCTGCAGCTCAAGCAGCAGCTGAGTTCCTCTCAAAC
Populus tremula abi1B gene for abscisic insensitive 1B, isolate 24.1.
AM690397.1:2521-2538
AATGGCGTTGCGCTCTCGTCCTCAAGGAGC2521GAGGGAATTGATCCTGCAGCTCAAGCAGCAGCTGAGTTCCTCTCAAAC
Populus tremula abi1B gene for abscisic insensitive 1B, isolate 24.2.
AM690398.1:2521-2538
AATGGCGTTGCGCTCTCGTCCTCAAGGAGC2521GAGGGAATTGATCCTGCAGCTCAAGCAGCAGCTGAGTTCCTCTCAAAC
Populus tremula abi1B gene for abscisic insensitive 1B, isolate 58.1.
AM690399.1:2521-2538
AATGGCGTTGCGCTCTCGTCCTCAAGGAGC2521GAGGGAATTGATCCTGCAGCTCAAGCAGCAGCTGAGTTCCTCTCAAAC
Populus tremula abi1B gene for abscisic insensitive 1B, isolate 58.2.
AM690400.1:2521-2538
AATGGCGTTGCGCTCTCGTCCTCAAGGAGC2521GAGGGAATTGATCCTGCAGCTCAAGCAGCAGCTGAGTTCCTCTCAAAC
Populus tremula abi1B gene for abscisic insensitive 1B, isolate 61.2.
AM690401.1:2522-2539
AATGGCGTTGCGCTCTCGTCCTCAAGGAGC2522GAGGGAATTGATCCTGCAGCTCAAGCAGCAGCTGAGTTCCTCTCAAAC
Populus tremula abi1B gene for abscisic insensitive 1B, isolate 65.1.
AM690402.1:2524-2541
AATGGCGTTGCGCTCTCGTCCTCAAGGAGC2524GAGGGAATTGATCCTGCAGCTCAAGCAGCAGCTGAGTTCCTCTCAAAC
Populus tremula abi1B gene for abscisic insensitive 1B, isolate 65.2.
AM690403.1:2524-2541
AATGGCGTTGCGCTCTCGTCCTCAAGGAGC2524GAGGGAATTGATCCTGCAGCTCAAGCAGCAGCTGAGTTCCTCTCAAAC
Populus tremula abi1B gene for abscisic insensitive 1B, isolate 67.2.
AM690404.1:2523-2540
AATGGCGTTGCGCTCTCGTCCTCAAGGAGC2523GAGGGAATTGATCCTGCAGCTCAAGCAGCAGCTGAGTTCCTCTCAAAC
Populus tremula abi1B gene for abscisic insensitive 1B, isolate 70.2.
AM690405.1:2520-2537
AATGGCGTTGCGCTCTCGTCCTCAAGGAGC2520GAGGGAATTGATCCTGCAGCTCAAGCAGCAGCTGAGTTCCTCTCAAAC
Populus tremula abi1B gene for abscisic insensitive 1B, isolate 87.2.
AM690406.1:2524-2541
AATGGCGTTGCGCTCTCGTCCTCAAGGAGC2524GAGGGAATTGATCCTGCAGCTCAAGCAGCAGCTGAGTTCCTCTCAAAC
Populus tremula protein phosphatase 2C (HAB3b) mRNA, partial cds.
MF802331.1:722-739
AATGGCGTTGCGCTCTCGTCCTCAAGGAGC722GAGGGAATTGATCCTGCAGCTCAAGCAGCAGCTGAGTTCCTCTCAAAC
Buxus sempervirens genome assembly, chromosome: 14.
OX387195.1:28338856-28338873
CACATTCTCATCTCTAGTTTTTTAATTCTA28338856GAGGGAATTGATCCTGCATTCTAAATGTTAGGGCTTTATTCTGATATT
Oldenlandia corymbosa var. corymbosa genome assembly, chromosome: 2.
OX459119.1:6377876-6377893
AATGGTGTCATACCACCCTCGGGAAGAGGT6377876GAGGGAATTGATCCTGCAGCTCAGGCAGCAGCAGAGTGCCTTTCAAAC
Populus nigra genome assembly, chromosome: 3.
OX637674.1:4405401-4405418
AATGGCGTTGCGCTCTCCTCCTCAAGGAGC4405401GAGGGAATTGATCCTGCAGCTCAAGCAGCAGCTGAGTTCCTCTCAAAC
Hibiscus tridactylites genome assembly, chromosome: 11.
OY288275.1:59964623-59964640
GGTGATCAATTGACTGGTGAAAAGGGTGGG59964623GAGGGAATTGATCCTGCAGCTCAATCTGCAGCAGAGTACCTCTCAAGG
Buathra laborator genome assembly, chromosome: 3.
OW203894.1:17136911-17136928
CTCCGACGACGAGATGAACAGACGCGACGA17136911GAGGGAATTGATCCTGCAGTCGCTTCGCCCCTTCCTTTTTCTTCCTCT
Lampropteryx suffumata genome assembly, chromosome: 16.
OX402560.1:15275693-15275710
CATGCAGATCAAACGATCATTTTTCCCGCT15275693GAGGGAATTGATCCTGCAACATTCTGCGTGTCAGACGGACCTTAGCCC
Subacronicta megacephala genome assembly, chromosome: 24.
OY292537.1:3949414-3949431
GGAACAACTAGGCAGTACAAATATTTCCAC3949414GAGGGAATTGATCCTGCAACTGGTCAAATGCGTAGGCACTGTACATTT
Xestia rhomboidea genome assembly, chromosome: 20.
OY970776.1:11186123-11186140
CTGTAGGCCATACAAATATTTTTATTCCGT11186123GAGGGAATTGATCCTGCAACACGCAGCGCAGCATCCAATCACTCAGCC
Ischnus inquisitorius genome assembly, chromosome: 3.
OZ001245.1:6960069-6960086
CTCCGACGACGAGATGAACAGACGCGACGA6960069GAGGGAATTGATCCTGCAGTCCCCTCTCCCCGTCCCTCTTTTCTTCGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGCAGGATCAATTCCCTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGCAGGATCAATTCCCTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.618 | 0.609 | search_plus_done; http://172.18.8.135:50400/match?q=TGCAGGATCAATTCCCTC&k=0&no_gap=0&offset=0&limit=50
1.021 | 0.403 | search_minus_done; http://172.18.8.135:50400/match?q=GAGGGAATTGATCCTGCA&k=0&no_gap=0&offset=0&limit=15
1.047 | 0.027 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).