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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:02:53, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Orcinus orca genome assembly, chromosome: 1.
OW443360.1:8618497-8618514
ACCCCAGGGCCAGGTACCTGAAAAGTAGGC8618497TGCATGCATGGAAACGACTCAAACTGTCCAATCCTAAGATTGCTCAAA
Vespertilio murinus genome assembly, chromosome: 4.
OZ004707.1:7795279-7795296
AGGAAGCTGCAGAAGGCAGAGGTCTGGAGA7795279TGCATGCATGGAAACGACTGACTGCTGAGTGCATGTCTGGCTTTCTCA
Pseudochaenichthys georgianus genome assembly, chromosome: 12.
LR792557.1:16340034-16340051
GCTCTAAATTGTTTTGCTAAAGGAGTTTTT16340034TGCATGCATGGAAACGACGTGAAGCTTCATTGAAGTGAGTTGATTTTC
Triticum aestivum genome assembly, chromosome: 6D.
LR862525.1:232261788-232261805
CAAAGGCAAGCCCAAGCGCAACAAAAAAAG232261788TGCATGCATGGAAACGACGGGAGTGATACCGAGGCCGCAGCAGTCGAT
Triticum aestivum genome assembly, chromosome: 6D.
LR862546.1:240437187-240437204
CAAAGGCAAGCCCAAGCGCAACAAAAAAAG240437187TGCATGCATGGAAACGACGGGAGTGATACCGAGGCCGCAGCAGTCGAT
Triticum aestivum genome assembly, chromosome: 6D.
LR862567.1:249408381-249408398
CAAAGGCAAGCCCAAGCGCAACAAAAAAAG249408381TGCATGCATGGAAACGACGGGAGTGATACCGAGGCCGCAGCAGTCGAT
Triticum aestivum genome assembly, chromosome: 6D.
LR865475.1:249626240-249626257
CAAAGGCAAGCCCAAGCGCAACAAAAAAAG249626240TGCATGCATGGAAACGACGGGAGTGATACCGAGGCCGCAGCAGTCGAT
Triticum aestivum genome assembly, chromosome: 6D.
LR865496.1:244231487-244231504
CAAAGGCAAGCCCAAGCGCAACAAAAAAAG244231487TGCATGCATGGAAACGACGGGAGTGATACCGAGGCCGCAGCAGTCGAT
Triticum aestivum genome assembly, chromosome: 6D.
LR865517.1:253223009-253223026
CAAAGGCAAGCCCAAGCGCAACAAAAAAAG253223009TGCATGCATGGAAACGACGGGAGTGATACCGAGGCCGCAGCAGTCGAT
Triticum aestivum genome assembly, chromosome: 6D.
LR865756.1:256027191-256027208
CAAAGGCAAGCCCAAGCGCAACAAAAAAAG256027191TGCATGCATGGAAACGACGGGAGTGATACCGAGGCCGCAGCAGTCGAT
Triticum aestivum genome assembly, chromosome: 6D.
LR865777.1:253916467-253916484
CAAAGGCAAGCCCAAGCGCAACAAAAAAAG253916467TGCATGCATGGAAACGACGGGAGTGATACCGAGGCCGCAGCAGTCGAT
Triticum aestivum genome assembly, chromosome: 6D.
LR877326.1:257071248-257071265
CAAAGGCAAGCCCAAGCGCAACAAAAAAAG257071248TGCATGCATGGAAACGACGGGAGTGATACCGAGGCCGCAGCAGTCGAT
Triticum aestivum genome assembly, chromosome: 6D.
LR878452.1:252488152-252488169
CAAAGGCAAGCCCAAGCGCAACAAAAAAAG252488152TGCATGCATGGAAACGACGGGAGTGATACCGAGGCCGCAGCAGTCGAT
Triticum aestivum genome assembly, chromosome: 6D.
LS992097.1:246668236-246668253
CAAAGGCAAGCCCAAGCGCAACAAAAAAAG246668236TGCATGCATGGAAACGACGGGAGTGATACCGAGGCCGCAGCAGTCGAT
Triticum aestivum genome assembly, chromosome: 6D.
OU015738.1:275217948-275217965
CAAAGGCAAGCCCAAGCGCAACAAAAAAAG275217948TGCATGCATGGAAACGACGGGAGTGATACCGAGGCCGCAGCAGTCGAT
Avena eriantha genome assembly, chromosome: 5C.
OU342744.1:386126638-386126655
TTACTTCTTATTTTTTTGATAATCGACAAA386126638TGCATGCATGGAAACGACGCAGGAAACCGCTGCTCGTCCTTGATCAGA
Triticum aestivum genome assembly, chromosome: 6D.
OU343188.1:276746406-276746423
CAAAGGCAAGCCCAAGCGCAACAAAAAAAG276746406TGCATGCATGGAAACGACGGGAGTGATACCGAGGCCGCAGCAGTCGAT
Triticum aestivum genome assembly, chromosome: 6D.
OU963889.1:261374847-261374864
CAAAGGCAAGCCCAAGCGCAACAAAAAAAG261374847TGCATGCATGGAAACGACGGGAGTGATACCGAGGCCGCAGCAGTCGAT
Triticum aestivum genome assembly, chromosome: 6D.
OV100754.1:263923683-263923700
CAAAGGCAAGCCCAAGCGCAACAAAAAAAG263923683TGCATGCATGGAAACGACGGGAGTGATACCGAGGCCGCAGCAGTCGAT
Triticum aestivum genome assembly, chromosome: 6D.
OW530327.1:263923683-263923700
CAAAGGCAAGCCCAAGCGCAACAAAAAAAG263923683TGCATGCATGGAAACGACGGGAGTGATACCGAGGCCGCAGCAGTCGAT
Triticum aestivum genome assembly, chromosome: 6D.
OX637242.1:194802900-194802917
CAAAGGCAAGCCCAAGCGCAACAAAAAAAG194802900TGCATGCATGGAAACGACGGGAGTGATACCGAGGCCGCAGCAGTCGAT
Malus x robusta genome assembly, chromosome: 17.
OY720341.1:1373384-1373401
ATCACTACAAGAAGTAAGGAATTTAGGGTT1373384TGCATGCATGGAAACGACGGGTCATTTTCCAACTGTGCTCGCCGTTGC
Adineta vaga breed AD008 chromosome 5.
CP075494.1:9442162-9442179
ATTCGTTTTTTTTTTCTTTTTCTCTCGTAT9442162TGCATGCATGGAAACGACGAGAGAGCAAAAACACAATCACAGAGAGCG
Cantharis flavilabris genome assembly, chromosome: 1.
OX424435.1:39171565-39171582
TAATTTACTGCAACCTTAATGCAAAAACCT39171565TGCATGCATGGAAACGACAAAAAATTGGAATAGTTGTATAAGACTTAT
Leptopterna dolabrata genome assembly, chromosome: 11.
OX940985.1:31606286-31606303
GGAGTGTTAAAAATCGTCCATATAGTCATT31606286TGCATGCATGGAAACGACTTTATGGACAATTTTATTGGTTTTTGAATG
Aporrectodea icterica genome assembly, chromosome: 1.
OY744602.1:808527-808544
AAGACAGCCCTGGTGATAAAGAAACACATG808527TGCATGCATGGAAACGACTTGACAAAACGGTGGATTGAACTAACCTCG
Muscardinus avellanarius genome assembly, chromosome: 1.
OY726557.1:142062283-142062300
TATTAATTGTACAAACTAATAAGTTTCACT142062283GTCGTTTCCATGCATGCATATATTGTATGTGGATCGTGCCCACTCCCC
Eutrigla gurnardus genome assembly, chromosome: 4.
OY741267.1:30654894-30654911
AAACCTTCCTCATTAAAACTGATTTCAGTT30654894GTCGTTTCCATGCATGCACCTCCATAAGCTGATTAGTCTGAGTTTAGG
Danio rerio genomic clone DKEY-179E2, genomic survey sequence.
BX179938.1:8-25
CTCTAGA8GTCGTTTCCATGCATGCAAGCTTTATTTGCTCTGCAACCGATAATCAA
Malus hybrid cultivar cultivar Flame chromosome 4.
CP141913.1:28687399-28687416
GCAACGGCGAGCACAGTTGGAAAATGACCC28687399GTCGTTTCCATGCATGCAAACCCTAAATTCCTTACTTCTTGTAGTGAT
Malus hybrid cultivar cultivar Royalty chromosome 4.
CP141956.1:28603426-28603443
GCAACGGCGAGCACAGTTGGAAAATGACCC28603426GTCGTTTCCATGCATGCAAACCCTAAATTCCTTACTTCTTGTAGTGAT
Malus hybrid cultivar cultivar SH6 chromosome 4.
CP143378.1:27906201-27906218
GCAACGGCGAGCTCAGTTGGAAAATGACCC27906201GTCGTTTCCATGCATGCAAACCCTAAATTCCTTACTTCTTGTAGTACT
Aegilops sharonensis genome assembly, chromosome: 6S.
LR880971.1:402785789-402785806
ATCGACTGCTACATCCTCGGTATCACTCCC402785789GTCGTTTCCATGCATGCACTTTTTTTGTTGCGCTTGGGCTTGCCTTTG
Aegilops longissima genome assembly, chromosome: 6S.
LR881074.1:360207242-360207259
ATCGACTGCTACATCCTCGGTATCACTCCC360207242GTCGTTTCCATGCATGCACTTTTTTTGTTGCGCTTGGGCTTGCCTTTG
Avena insularis genome assembly, chromosome: 1D.
OU342345.1:373940097-373940114
CTCAACGCCATTCTGCTAATCAATTTTCGC373940097GTCGTTTCCATGCATGCAGCTGTAAGATTTGATGGCTTCATGGCGCGC
Avena eriantha genome assembly, chromosome: 3C.
OU342742.1:452817949-452817966
TCTGATCAAGGATGAGCAATGGTTTCGTGC452817949GTCGTTTCCATGCATGCATTTGTCGATCATCAAAAAAAAGTAATATCT
Malus domestica genome assembly, chromosome: 4.
OU744956.1:30093422-30093439
GCAACGGCGAGCACAGTTGGAAAATGACCC30093422GTCGTTTCCATGCATGCAAACCCTAAATTCCTTACTTCTTGTAGTGAT
Malus domestica genome assembly, chromosome: 4.
OU744994.1:30004926-30004943
GCAACGGCGAGCACAGTTGGAAAATGACCC30004926GTCGTTTCCATGCATGCAAACCCTAAATTCCTTACTTCAAAATAATAA
Berberis vulgaris genome assembly, chromosome: 10.
OY747133.1:55516164-55516181
CCGAATTAGCTTTAAACCAACCTTGTTCAA55516164GTCGTTTCCATGCATGCAAAGAGGGTGTACAAAAACTGAAATTCACTT
Crataegus laevigata genome assembly, chromosome: 1.
OY756938.1:41893155-41893172
GCAACGGCGAGCTCAGTTGGAAAATGACCC41893155GTCGTTTCCATGCATGCAAACCCTAAATTCCTTGCTTCTTGTAGTGAT
Lepidonotus clava genome assembly, chromosome: 8.
OW387140.1:10626586-10626603
TGACATTAATTCTTTGTTTCCAAAACGGGA10626586GTCGTTTCCATGCATGCAATCAAACCACTTGCCCGTTCCACCCAATAG
Oscarella lobularis genome assembly, chromosome: 9.
OX382158.1:165288-165305
AGGTGAGAGTTGACGGGAGACGCGAGGAAT165288GTCGTTTCCATGCATGCATTCGCGAAATCTTGCAGGCTGATAATTCGG
Taphrorychus bicolor genome assembly, chromosome: 6.
OX638302.1:13641756-13641773
ACTATTCTTCTTTAGTCTTCGTCTTCTGTC13641756GTCGTTTCCATGCATGCAGCAATCTTCTTTTTTCTCTTAATTAATTCA
Cantharis nigra genome assembly, chromosome: 1.
OY294028.1:59424748-59424765
AAGTCTTATACAACTATATTCCAATTTTTT59424748GTCGTTTCCATGCATGCAAGGTTTTTGCACTAAGGTTGCAGTAAATTA
Eimeria praecox genome assembly, chromosome: 9.
OY986954.1:901563-901580
AGGAGCAGTGATTCCTGACAGTGCGGAGGT901563GTCGTTTCCATGCATGCATTTAGTTTCTTAGGATTTCATGTCTCTTCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGCATGCATGGAAACGAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGCATGCATGGAAACGAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.343 | 0.335 | search_plus_done; http://172.18.8.135:50400/match?q=TGCATGCATGGAAACGAC&k=0&no_gap=0&offset=0&limit=50
0.469 | 0.126 | search_minus_done; http://172.18.8.135:50400/match?q=GTCGTTTCCATGCATGCA&k=0&no_gap=0&offset=0&limit=24
0.482 | 0.013 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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