GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 02:51:28, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:18139919-18139938
TGGAATGGCATCTGATACCCATCAGCTAAC18139919TGCCACGTAGTACACTTGTTAATTAGTGGATCCATACTTAAAAATAATAA
Brassica napus genome assembly, chromosome: A08.
HG994362.1:21453052-21453071
TGGAATGGCATCTGATACCCATCAGCTAAC21453052TGCCACGTAGTACACTTGTTAATTAGTGGATCCATACTTAAAAATAATAA
Brassica rapa genome, scaffold: A08.
LR031575.1:20425873-20425892
TGGAATGGCATCTGATACCCATCAGCTAAC20425873TGCCACGTAGTACACTTGTTAATTAGTGGATCCATACTTAAAAATAATAA
Brassica rapa genome assembly, chromosome: A08.
LS974624.2:26164476-26164495
TGGAATGGCATCTGATACCCATCAGCTAAC26164476TGCCACGTAGTACACTTGTTAATTAGTGGATCCATACTTAAAAATAATAA
BOMHS60TF BO_2_3_KB Brassica oleracea genomic clone BOMHS60, genomic survey sequence.
BH679637.1:166-185
TTATTATTTTTAAGCATGGATCCACTAACT166AACAAGTGTACTACGTGGCAGTTAGCTGATGGGTATCAGATGCCATTCCA
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:5054609-5054628
TTATTATTTTTAAGTATGGATCCACTAATT5054609AACAAGTGTACTACGTGGCAGTTAGCTGATGGGTATCAGATGCCATTCCA
Brassica napus genome assembly, chromosome: C03.
HG994367.1:56523392-56523411
TTATTATTTTTAAGTATGGATCCACTAATT56523392AACAAGTGTACTACGTGGCAGTTAGCTGATGGGTATCAGATGCCATTCCA
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:57072078-57072097
TTATTATTTTTAAGTATGGATCCACTAATT57072078AACAAGTGTACTACGTGGCAGTTAGCTGATGGGTATCAGATGCCATTCCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGCCACGTAGTACACTTGTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGCCACGTAGTACACTTGTT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.105 | 0.096 | search_plus_done; http://172.18.8.135:50400/match?q=TGCCACGTAGTACACTTGTT&k=0&no_gap=0&offset=0&limit=50
0.145 | 0.041 | search_minus_done; http://172.18.8.135:50400/match?q=AACAAGTGTACTACGTGGCA&k=0&no_gap=0&offset=0&limit=46
0.148 | 0.003 | cgi_end;

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