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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-12 12:29:10, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Scyliorhinus canicula genome assembly, chromosome: 8.
LR744037.1:61785419-61785438
TAAATATAAACATCAACTGAAAAACCAAAA61785419TGCCAGATTAAGACATGACATTGACAATATCTTGGAATGGACTAACTACA
Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:12179725-12179744
ATTAGACATTATTAGTAAGCCTAGAGTTCT12179725TGCCAGATTAAGACATGACAAGGATACATTATGTTACAACTTAAGCTTCC
Brassica napus genome assembly, chromosome: A05.
HG994359.1:12160132-12160151
ATTAGACATTATTAGTAAGCCTAGAGTTCT12160132TGCCAGATTAAGACATGACAAGGATACATTATGTTACAACTTAAGCTTCC
Brassica rapa genome, scaffold: A05.
LR031570.1:17915983-17916002
ACCATTAGACATTAGTAAGCCTAGAGTTCT17915983TGCCAGATTAAGACATGACAAGGATACATTATGTTACAACTTAAGCTTCC
Brassica rapa genome assembly, chromosome: A05.
LS974621.2:12006096-12006115
ACCATTAGACATTAGTAAGCCTAGAGTTCT12006096TGCCAGATTAAGACATGACAAGGATACATTATGTTACAACTTAAGCTTCC
4_Tte_b3v08.
OE000721.1:55474-55493
AAACAGACGTCCTCAGAGTAGAGATATGAT55474TGCCAGATTAAGACATGACAGGAGCATCTTCAATCTTTCTTTTATTATAG
Agrochola lychnidis genome assembly, chromosome: Z.
OY796848.1:12478335-12478354
GGAAACAATGTTGCTATCGTAAGAAATGGA12478335TGCCAGATTAAGACATGACATGGCGGTACAGACGTACTATGCGACATGCG
Agrochola litura genome assembly, chromosome: Z.
OX424491.1:20178237-20178256
CGCATGTCGCATAGTACGTCTGTACCGCCA20178237TGTCATGTCTTAATCTGGCATCCATTTCTTACGTTAGCAACATTGTTTCC
Chloroclystis v-ata genome assembly, chromosome: 1.
OY829895.1:17318387-17318406
CTGTGCTTGCGGTGTCTTTGGACGGGTGAG17318387TGTCATGTCTTAATCTGGCATATTTTTAGACTGTCCCCTTTTTTGTACTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGCCAGATTAAGACATGACA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGCCAGATTAAGACATGACA | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.409 | 0.400 | search_plus_done; http://172.18.8.135:50400/match?q=TGCCAGATTAAGACATGACA&k=0&no_gap=0&offset=0&limit=50
0.520 | 0.111 | search_minus_done; http://172.18.8.135:50400/match?q=TGTCATGTCTTAATCTGGCA&k=0&no_gap=0&offset=0&limit=43
0.522 | 0.001 | cgi_end;

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