GGGenome | Results

2025-04-06 17:31:25, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

pOP-CNI02051_EST_C_1_pSK_SK CNI (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CNI02051 5', mRNA sequence.
EY405143.1:24-47

TGGAAGGTCATGAACTGGAAATA24TGCCGGTGAAGTCTACGACAAAGAGATTGCCTAATGTGCGCTTTTTGTTCTGTG

pOP-EO04255_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO04255 5', mRNA sequence.
EY411297.1:112-135

GAACATATGGAAGGTCATGAACTGGAAATA112TGCCGGTGAAGTCTACGACAAAGAGATTGCCTAATGTGCGCTTTTTGTTCTGTG

Elaeis guineensis clone estEgSNP25 manganese superoxide dismutase (MnSOD) mRNA, complete cds.
JX438715.1:740-763

GAACATATGGAAGGTCATGAACTGGAAATA740TGCCGGTGAAGTCTACGACAAAGAGATTGCCTAATGTGCGCTTTTTGTTCTGTG

TSA: Elaeis guineensis isotig06633.Elguifruit mRNA sequence.
JO093891.1:159-182

CACAGAACAAAAAGCGCACATTAGGCAATC159TCTTTGTCGTAGACTTCACCGGCATATTTCCAGTTCATGACCTTCCATATGTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
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BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.008 | 0.008 | search_start;
0.243 | 0.234 | search_plus_done; http://172.18.8.135:50400/match?q=TGCCGGTGAAGTCTACGACAAAGA&k=0&no_gap=0&offset=0&limit=50
0.281 | 0.038 | search_minus_done; http://172.18.8.135:50400/match?q=TCTTTGTCGTAGACTTCACCGGCA&k=0&no_gap=0&offset=0&limit=47
0.282 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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