GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 08:25:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

CGN-43672 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w20a20 5', mRNA sequence.
DV698091.1:596-617
CAGCAGCAGCAGCAGCAGCAACCGCAGCAC596CACCTGGACAACAACAACGGCAGCTCCACTCCAATGGAGAAAATGCTAAAAC
CC-L01_023_F05 Coffea young leaves Coffea canephora cDNA clone CC-L01_023_F05, mRNA sequence.
EE193462.1:107-128
CAGCAGCAGCAGCAGCAGCAACCGCAGCAC107CACCTGGACAACAACAACGGCAGCTCCACTCCAATGGAGAAAATGCTAAAAC
CA00-XX-RX1-028-C07-EB.F Coffea arabica RX1 Coffea arabica cDNA clone CA00-XX-RX1-028-C07-EB, mRNA sequence.
GW443200.1:214-235
CAGCAGCAGCAGCAGCAGCAACCGCAGCAC214CACCTGGACAACAACAACGGCAGCTCCACTCCAATGGAGAAGATGCTAAAAC
CA00-XX-BP1-026-F01-BM.F Coffea arabica BP1 Coffea arabica cDNA clone CA00-XX-BP1-026-F01-BM, mRNA sequence.
GW454387.1:322-343
CAGCAGCAGCAGCAGCAGCAACCGCAGCAC322CACCTGGACAACAACAACGGCAGCTCCACTCCAATGGAGAAGATGCTAAAAC
CA00-XX-FR1-001-A07-MC.F Coffea arabica FR1 Coffea arabica cDNA clone CA00-XX-FR1-001-A07-MC, mRNA sequence.
GW487100.1:322-343
CAGCAGCAGCAGCAGCAGCAACCGCAGCAC322CACCTGGACAACAACAACGGCAGCTCCACTCCAATGGAGAAGATGCTAAAAC
CA00-XX-FR1-008-D02-BG.F Coffea arabica FR1 Coffea arabica cDNA clone CA00-XX-FR1-008-D02-BG, mRNA sequence.
GW487535.1:322-343
CAGCAGCAGCAGCAGCAGCAACCGCAGCAC322CACCTGGACAACAACAACGGCAGCTCCACTCCAATGGAGAAGATGCTAAAAC
Rhodoferax sp. BAB1 chromosome, complete genome.
CP054424.1:1913614-1913635
GAGCGTGACGAATTCTCGGCCGGTTTCTAC1913614CACCTGGACAACAACAACGGCATGAACTACGGCATGCCCTGGATCCGCCCCT
Hydrogenophaga taeniospiralis strain LT2 chromosome, complete genome.
CP075183.1:3017984-3018005
GAGCGCAACGAGTTCCAGGTCAACCTCTAC3017984CACCTGGACAACAACAACGGCATCAACTACGGCATTCCGTACATCGCGCCCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGCCGTTGTTGTTGTCCAGGTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGCCGTTGTTGTTGTCCAGGTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.107 | 0.099 | search_plus_done; http://172.18.8.135:50400/match?q=TGCCGTTGTTGTTGTCCAGGTG&k=0&no_gap=0&offset=0&limit=50
0.515 | 0.408 | search_minus_done; http://172.18.8.135:50400/match?q=CACCTGGACAACAACAACGGCA&k=0&no_gap=0&offset=0&limit=50
0.520 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).