GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 09:27:59, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Psittacula echo genome assembly, chromosome: 5.
OY725425.1:30516158-30516177
AGCAAAACAAAGTGGTTTATTTTTATAATT30516158TGCCTGAGGTCTGTATTTCTGGAAAGGCACCAGTTTCTGCTTCCTGACTA
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:10142535-10142554
CTGACACTAAAAATCCCTGTGTTATTTTCA10142535TGCCTGAGGTCTGTATTTCTTGAATTTTTCAGCAAATGGACTTTATCTTG
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:10554823-10554842
CTGACACTAAAAATCCCTGTGTTATTTTCA10554823TGCCTGAGGTCTGTATTTCTTGAATTTTTCAGCAAATGGACTTTATCTTG
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:10100493-10100512
CTGACACTAAAAATCCCTGTGTTATATTCA10100493TGCCTGAGGTCTGTATTTCTTGAAATTTTCAGCAAATGGACTTTATCTTG
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:10865949-10865968
CTGACACTAAAAATCCCTGTGTTATATTCA10865949TGCCTGAGGTCTGTATTTCTTGAAATTTTCAGCAAATGGACTTTATCTTG
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:10369722-10369741
CTGACACTAAAAATCCCTGTGTTATTTTCA10369722TGCCTGAGGTCTGTATTTCTTGAATTTTTCAGCAAATGGACTTTATCTTG
Crataegus laevigata genome assembly, chromosome: 2.
OY756939.1:11302660-11302679
CTGACACTAAAAATCCCTGTGTTATATTCA11302660TGCCTGAGGTCTGTATTTCTTGAATTTTTCAGCGAATGGACTTTATCTTG
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:8253666-8253685
CTGACACTAAAAATCCCTGTGTTATATTCA8253666TGCCTGAGGTCTGTATTTCTTGAATTTTTCAGCGAATGGACTTTTATCTT
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:33308069-33308088
AAGAAAAAGTTCCATTCGCTGTCAAATTCA33308069AGAAATACAGACCTCAGGCATGAATATAACACAGGGGTTTTTAGTGTCAG
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141962.1:32051903-32051922
AAGATAAAGTTCCATTCGCTGTCAAATTCA32051903AGAAATACAGACCTCAGGCATGAATATAACACAGGGGTTTTTAGTGTCAG
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:32604783-32604802
AAGATAAAGTTCCATTCGCTGTCAAATTCA32604783AGAAATACAGACCTCAGGCATGAATATAACACAGGGGTTTTTAGTGTCAG
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:36269449-36269468
CAAGATAAAGTCCATTTGCTGAAAAATTCA36269449AGAAATACAGACCTCAGGCATGAAAATAACACAGGGATTTTTAGTGTCAG
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:33569328-33569347
AAGATAAAAGTCCATTCGCTGAAAAATTCA33569328AGAAATACAGACCTCAGGCATGAATATAACACAGGGATTTTTAGTGTCAG
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:31230361-31230380
AAGATAAAGTTCCATTCGCTGTCAAATTCA31230361AGAAATACAGACCTCAGGCATGAATATAACACAGGGGTTTTTAGTGTCAG
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:36392378-36392397
CAAGATAAGGTCCATTTGCTGAAAAATTCA36392378AGAAATACAGACCTCAGGCATGAAAATAACACAGGGATTTTTAGTGTCAG
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:33834473-33834492
AAGATAAAGTTCCATTCGTTGTCAAATTCA33834473AGAAATACAGACCTCAGGCATGAATATAACACAGGGGTTTTTAGTGTCAG
Malus domestica genome assembly, chromosome: 5.
OU696681.1:35715208-35715227
CAAGATAAAGTCCATTTGCTGAAAAATTCA35715208AGAAATACAGACCTCAGGCATGAAAATAACACAGGGATTTTTAGTGTCAG
Malus domestica genome assembly, chromosome: 5.
OU744546.1:35586723-35586742
CAAGATAAAGTCCATTTGCTGAAAAATTCA35586723AGAAATACAGACCTCAGGCATGAAAATAACACAGGGATTTTTAGTGTCAG
Malus domestica genome assembly, chromosome: 10.
OU744551.1:33921967-33921986
AAGATAAAGTTCCATTCGTTGTCAAATTCA33921967AGAAATACAGACCTCAGGCATGAATATAACACAGGGGTTTTTAGTGTCAG
Malus domestica genome assembly, chromosome: 5.
OU744957.1:35725983-35726002
CAAGATAAAGTCCATTTGCTGAAAAATTCA35725983AGAAATACAGACCTCAGGCATGAAAATAACACAGGGATTTTTAGTGTCAG
Malus domestica genome assembly, chromosome: 5.
OU744995.1:36862474-36862493
CAAGATAAAGTCCATTTGCTGAAAAATTCA36862474AGAAATACAGACCTCAGGCATGAAAATAACACAGGGATTTTTAGTGTCAG
Malus domestica genome assembly, chromosome: 10.
OU745000.1:33746015-33746034
AAGATAAAGTTCCATTCGTTGTCAAATTCA33746015AGAAATACAGACCTCAGGCATGAATATAACACAGGGGTTTTTAGTGTCAG
Malus x robusta genome assembly, chromosome: 4.
OY720328.1:32412057-32412076
AAGATAAAGTTCCATTCGCTGTCAAATTCA32412057AGAAATACAGACCTCAGGCATGAATATAACACAGGGGTTTTTAGTGTCAG
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:32438274-32438293
AAGATAAAGTTCCTTTCGCTGTCAAATTCA32438274AGAAATACAGACCTCAGGCATGAATATAACACAGGGGTTTTTAGTTTCAG
Pyrus communis genome assembly, chromosome: 3.
OY757070.1:23149646-23149665
AAGATAAAGTTCCATTCGCTGTCAAATTCA23149646AGAAATACAGACCTCAGGCATGAATATAACACAGGGGTTTTTAGTGTCAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGCCTGAGGTCTGTATTTCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGCCTGAGGTCTGTATTTCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.101 | 0.093 | search_plus_done; http://172.18.8.135:50400/match?q=TGCCTGAGGTCTGTATTTCT&k=0&no_gap=0&offset=0&limit=50
0.125 | 0.023 | search_minus_done; http://172.18.8.135:50400/match?q=AGAAATACAGACCTCAGGCA&k=0&no_gap=0&offset=0&limit=42
0.136 | 0.011 | cgi_end;

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