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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 20:24:39, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

BOHCN46TR BOHC Brassica oleracea genomic clone BOHCN46, genomic survey sequence.
BH561653.1:469-488
TAGACCAAGCTGCTGATCTTCTGATGGTAA469TGCGAACCGGAACCTACGTACGTCATGAGAGATAGAAGTCTTCTCTATGA
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:9041007-9041026
CAGACCAAGCTGCTGATCTTCTGATGGTAA9041007TGCGAACCGGAACCTACGTACGTCATGAGAGATAGAAGTCTTCTCAATGA
Sequence 5102 from Patent EP2221382.
HH768915.1:2012-2031
TCATAGAGAAGACTTCTATCTCTCATGACG2012TACGTAGGTTCCGGTTCGCATTACCATCAGAAGATCAGCAGCTTGGTCTA
40JKME7D_UP_022_B08_21MAY2004_062 40JKME7D Brassica napus cDNA 5', mRNA sequence.
DY016542.1:310-329
TCATTGAGAAGACTTCTATCTCTCATGACG310TACGTAGGTTCCGGTTCGCATTACCATCAGAAGATCAGCAGCTTGGTCTG
0131353 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV126041.1:286-305
TCATAGAGAAGACTTCTATCTCTCATGACG286TACGTAGGTTCCGGTTCGCATTACCATCAGAAGATCAGCAGCTTGGTCTA
BNAOV1GH_T3_040_D03_12JUL2007_025 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR443113.1:300-319
TCATTGAGAAGACTTCTATCTCTCATGACG300TACGTAGGTTCCGGTTCGCATTACCATCAGAAGATCAGCAGCTTGGTCTG
d08_03ju_2g.s 03ju Brassica juncea cDNA clone d08_03ju_2g 5, mRNA sequence.
GT071189.1:186-205
TCATAGAGAAGACTTCCATCTCTCACGACG186TACGTAGGTTCCGGTTCGCATTACCGTCAGAAGATCAGCAGCTTGGTCTA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_1951.
FX692559.1:1984-2003
TCATTGAGAAGACTTCTATCTCTCATGACG1984TACGTAGGTTCCGGTTCGCATTACCATCAGAAGATCAGCAGCTTGGTCTG
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:40216129-40216148
TCATAGAGAAGACTTCTATCTCTCATGACG40216129TACGTAGGTTCCGGTTCGCATTACCATCAGAAGATCAGCAGCTTGGTCTA
Brassica napus mRNA for nitrate reductase, complete cds.
D38220.1:2116-2135
TCATAGAGAAGACTTCTATCTCTCATGACG2116TACGTAGGTTCCGGTTCGCATTACCATCAGAAGATCAGCAGCTTGGTCTA
Brassica napus genome assembly, chromosome: A07.
HG994361.1:20583857-20583876
TCATTGAGAAGACTTCTATCTCTCATGACG20583857TACGTAGGTTCCGGTTCGCATTACCATCAGAAGATCAGCAGCTTGGTCTG
Brassica napus genome assembly, chromosome: C06.
HG994370.1:33975248-33975267
TCATAGAGAAGACTTCTATCTCTCATGACG33975248TACGTAGGTTCCGGTTCGCATTACCATCAGAAGATCAGCAGCTTGGTCTA
Brassica rapa nitrate reductase (NR) mRNA, complete cds.
KP852556.1:2020-2039
TCATAGAGAAGACTTCTATCTCTCATGACG2020TACGTAGGTTCCGGTTCGCATTACCATCAGAAGATCAGCAGCTTGGTCTG
Brassica juncea cultivar Varuna nitrate reductase 1 (NIA1) mRNA, complete cds.
KT119587.1:2112-2131
TCATTGAGAAGACTTCTATCTCTCATGACG2112TACGTAGGTTCCGGTTCGCATTACCATCAGAAGATCAGCAGCTTGGTCTG
Brassica rapa genome, scaffold: A07.
LR031574.1:19538428-19538447
TCATTGAGAAGACTTCTATCTCTCATGACG19538428TACGTAGGTTCCGGTTCGCATTACCATCAGAAGATCAGCAGCTTGGTCTG
Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:30638837-30638856
TCATAGAGAAGACTTCTATCTCTCATGACG30638837TACGTAGGTTCCGGTTCGCATTACCATCAGAAGATCAGCAGCTTGGTCTA
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:19829634-19829653
TCATTGAGAAGACTTCTATCTCTCATGACG19829634TACGTAGGTTCCGGTTCGCATTACCATCAGAAGATCAGCAGCTTGGTCTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGCGAACCGGAACCTACGTA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGCGAACCGGAACCTACGTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.191 | 0.182 | search_plus_done; http://172.18.8.135:50400/match?q=TGCGAACCGGAACCTACGTA&k=0&no_gap=0&offset=0&limit=50
0.601 | 0.410 | search_minus_done; http://172.18.8.135:50400/match?q=TACGTAGGTTCCGGTTCGCA&k=0&no_gap=0&offset=0&limit=48
0.611 | 0.010 | cgi_end;

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