GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 17:49:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_2987.
FX701091.1:1182-1202
AGTGGTCGTTGACACTCAGATTGCTGAAAT1182TGCGACCCAAGTAGGTGAAACCGGCGCTGTTATCCGACTCCATGGATGCAG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_50911.
FX736294.1:1164-1184
AGTGGTCGTTGACACTCAGATTGCTGAAAT1164TGCGACCCAAGTAGGTGAAACCGGCGCTGTTATCCGACTCCATGGATGCAG
KBrB101A02R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB101A02, genomic survey sequence.
ED516070.1:672-692
AGTGGTCGTTGACACTCAGATTGCTGAAAT672TGCGACCCAAGTAGGTGAAACCGGCGCTGTTATCCGTCTCCATGGATGCAG
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 878 unordered pieces.
FJ789640.1:523713-523733
AGTGGTCGTTGACACTCAGATTGCTGAAAT523713TGCGACCCAAGTAGGTGAAACCGGCGCTGTTATCCGACTCCATGGATGCAG
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:15144571-15144591
AGTGGTCGTTGACACTCAGATTGCTGAAAT15144571TGCGACCCAAGTAGGTGAAACCGGCGCTGTTATCCGACTCCATGGATGCAG
Brassica napus genome assembly, chromosome: A03.
HG994357.1:15027143-15027163
AGTGGTCGTTGACACTCAGATTGCTGAAAT15027143TGCGACCCAAGTAGGTGAAACCGGCGCTGTTATCCGACTCCATGGATGCAG
Brassica napus genome assembly, chromosome: C03.
HG994367.1:23555304-23555324
AGTGGTCGTTGACACTCAAATTGCTGAAAT23555304TGCGACCCAAGTAGGTGAAACCGGCGCTGTTATCCGACTCCATGGATGCAG
Brassica rapa genome, scaffold: A03.
LR031572.1:14775733-14775753
AGTGGTCGTTGACACTCAGATTGCTGAAAT14775733TGCGACCCAAGTAGGTGAAACCGGCGCTGTTATCCGACTCCATGGATGCAG
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:23266892-23266912
AGTGGTCGTTGACACTCAAATTGCTGAAAT23266892TGCGACCCAAGTAGGTGAAACCGGCGCTGTTATCCGACTCCATGGATGCAG
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:14901869-14901889
AGTGGTCGTTGACACTCAGATTGCTGAAAT14901869TGCGACCCAAGTAGGTGAAACCGGCGCTGTTATCCGACTCCATGGATGCAG
BN20.001K21F010914 BN20 Brassica napus cDNA clone BN20001K21, mRNA sequence.
CD816777.1:161-181
CTGCATCCATGGAGTCGGATAACAGCGCCG161GTTTCACCTACTTGGGTCGCAATTTCAGCAATCTGAGTGTCAACGACCACT
BR083232 infected leaf cDNA library KFPC Brassica rapa subsp. pekinensis cDNA clone KFPC-038D05 5', mRNA sequence.
EX096942.1:73-93
CTGCATCCATGGAGTCGGATAACAGCGCCG73GTTTCACCTACTTGGGTCGCAATTTCAGCAATCTGAGTGTCAACGACCACT
BOGAR43TF BOGA Brassica oleracea genomic clone BOGAR43, genomic survey sequence.
BH247635.1:242-262
CTGCATCCATGGAGTCGGATAACAGCGCCG242GTTTCACCTACTTGGGTCGCAATTTCAGCAATTTGAGTGTCAACGACCACT
BONRV54TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONRV54, genomic survey sequence.
BZ445507.1:255-275
CTGCATCCATGGAGTCGGATAACAGCGCCG255GTTTCACCTACTTGGGTCGCAATTTCAGCAATTTGAGTGTCAACGACCACT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049D17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189377.2:62527-62547
CTGCATCCATGGAGTCGGATAACAGCGCCG62527GTTTCACCTACTTGGGTCGCAATTTCAGCAATCTGAGTGTCAACGACCACT
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:55633442-55633462
CTGCATCCATGGAGTCGGATAACAGCGCCG55633442GTTTCACCTACTTGGGTCGCAATTTCAGCAATTTGAGTGTCAACGACCACT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGCGACCCAAGTAGGTGAAAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGCGACCCAAGTAGGTGAAAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.167 | 0.158 | search_plus_done; http://172.18.8.135:50400/match?q=TGCGACCCAAGTAGGTGAAAC&k=0&no_gap=0&offset=0&limit=50
0.326 | 0.159 | search_minus_done; http://172.18.8.135:50400/match?q=GTTTCACCTACTTGGGTCGCA&k=0&no_gap=0&offset=0&limit=40
0.330 | 0.004 | cgi_end;

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