GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:23:21, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KS13036H10 KS13 Capsicum annuum cDNA, mRNA sequence.
GD054950.1:69-88
TCATTTTAAATTACAATCATAACCATCAAA69TGCGGTGTGCTAAATAGTGCCAAAAGTAGTTGATTACTGAACATTAATAG
TSA: Capsicum annuum MGMT_Contig38924 mRNA sequence.
JW089168.1:139-158
TCATTTTAAATTACAATCATAACCATCAAA139TGCGGTGTGCTAAATAGTGCCAAAAGTAGTTGATTACTGAACATTAATAG
Capsicum annuum Takanotsume DNA, chromosome 12, sequence.
AP026707.1:261584060-261584079
TCATTTTAAATTACAATCATAACCATCAAA261584060TGCGGTGTGCTAAATAGTGCCAAAAGTAGTTGATTACTGAACATTAATAG
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 12.
CP124720.1:1092370-1092389
TCATTTTAAATTACAATCATAACCATCAAA1092370TGCGGTGTGCTAAATAGTGCCAAAAGTAGTTGATTACTGAATATTAATAG
Capsicum annuum Takanotsume DNA, chromosome 12, sequence.
AP026707.1:261692215-261692234
CTATTAATGTTCAGTAATCAACTACTTTTG261692215GCACTATTTAGCACACCGCATTTGATGGTTATGATTGTAATTTAAAATGA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 12.
CP124720.1:1218304-1218323
CTATTAATGTTCAGTAATCAACTACTTTTG1218304GCACTATTTAGCACACCGCATTTGATGGTTATGATTGTAATTTAAAATGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGCGGTGTGCTAAATAGTGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGCGGTGTGCTAAATAGTGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.240 | 0.232 | search_plus_done; http://172.18.8.135:50400/match?q=TGCGGTGTGCTAAATAGTGC&k=0&no_gap=0&offset=0&limit=50
0.261 | 0.021 | search_minus_done; http://172.18.8.135:50400/match?q=GCACTATTTAGCACACCGCA&k=0&no_gap=0&offset=0&limit=46
0.262 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).