GGGenome | Results

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2025-04-05 21:41:40, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

BN25.058E17F011029 BN25 Brassica napus cDNA clone BN25058E17, mRNA sequence.
CD824643.1:497-516

TTTGATCGGTGCTCACAACTTCACCCTAAT497TGCTACTATTTAGAAACCTCAGGAACTGATTTCTCCGGCGAGAAACTTTT

BNDH5DCT_UP_015_C04_26JAN2004_028 Brassica napus BNDH5DCT Brassica napus cDNA 5', mRNA sequence.
CN727458.1:497-516

TTTGATCGGTGCTCACAACTTCACCCTAAT497TGCTACTATTTAGAAACCTCAGGAACTGATTTCTCCGGCGAGAAAATTTT

BNARO6GH_T3_015_B12_07DEC2006_094 Brassica napus BNARO6GH Brassica napus cDNA 5', mRNA sequence.
ES910085.1:453-472

TTTGATCGGTGCTCACAACTTCACCCTAAT453TGCTACTATTTAGAAACCTCAGGAACTGATTTCTCCGGCGAGAAACTTTT

0120919 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV115607.1:342-361

TTTGATCGGTGCTCACAACTTCACCCTAAT342TGCTACTATTTAGAAACCTCAGGAACTGATTTCTCCGGCGAGAAACTGTT

0120927 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV115615.1:341-360

TTTGATCGGTGCTCACAACTTCACCCTAAT341TGCTACTATTTAGAAACCTCAGGAACTGATTTCTCCGGCGAGAAACTGTT

Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:24755772-24755791

TTTGATCGGTGCTCACAACTTCACCCTAAT24755772TGCTACTATTTAGAAACCTCAGGAACTGATTTCTCCGGCGAGAAACTTTT

Brassica napus genome assembly, chromosome: A03.
HG994357.1:24896581-24896600

TTTGATCGGTGCTCACAACTTCACCCTAAT24896581TGCTACTATTTAGAAACCTCAGGAACTGATTTCTCCGGCGAGAAACTTTT

Brassica napus genome assembly, chromosome: C07.
HG994371.1:48605255-48605274

TTTGATCGGTGCTCACAACTTCACCCTAAT48605255TGCTACTATTTAGAAACCTCAGGAACTGATTTCTCCGGCGAGAAACTGTT

Brassica rapa genome, scaffold: A03.
LR031572.1:24384221-24384240

TTTGATCGGTGCTCACAACTTCACCCTAAT24384221TGCTACTATTTAGAAACCTCAGGAACTGATTTCTCCGGCGAGAAACTTTT

Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:51370977-51370996

TTTGATCGGTGCTCACAACTTCACCCTAAT51370977TGCTACTATTTAGAAACCTCAGGAACTGATTTCTCCGGCGAGAAACTGTT

Brassica rapa genome assembly, chromosome: A03.
LS974619.2:24512063-24512082

TTTGATCGGTGCTCACAACTTCACCCTAAT24512063TGCTACTATTTAGAAACCTCAGGAACTGATTTCTCCGGCGAGAAACTTTT

Cardamine chenopodiifolia genome assembly, chromosome: 31.
OZ000489.1:10222678-10222697

TTTGATCGCTGCTCACAACTTCACCCAAAT10222678TGCTACTATTTAGAAACCTCAGGGACTGATTTTTCCGGCGAGAAACTATT

Troglohyphantes excavatus genome assembly, chromosome: 3.
OZ010668.1:64482150-64482169

TTATTTTTCACTTTGCATTATAGTTAGACT64482150TGCTACTATTTAGAAACCTCTTCAAAATTGTTTTAGTTGAACAAAACTGC

0120828 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV115516.1:674-693

AACAGTTTCTCGCCGGAGAAATCAGTTCCT674GAGGTTTCTAAATAGTAGCAATTAGGGTGAAGTTGTGAGCACCGATCAAA

0120834 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV115522.1:663-682

AACAGTTTCTCGCCGGAGAAATCAGTTCCT663GAGGTTTCTAAATAGTAGCAATTAGGGTGAAGTTGTGAGCACCGATCAAA

BR064550 silique cDNA library KBSP Brassica rapa subsp. pekinensis cDNA clone KBSP-038D06 5', mRNA sequence.
EX079906.1:469-488

AAAAGTTTCTCGCCGGAGAAATCAGTTCCT469GAGGTTTCTAAATAGTAGCAATTAGGGTGAAGTTGTGAGCACCGATCAAA

BR064621 silique cDNA library KBSP Brassica rapa subsp. pekinensis cDNA clone KBSP-039C06 5', mRNA sequence.
EX079977.1:455-474

AAAAGTTTCTCGCCGGAGAAATCAGTTCCT455GAGGTTTCTAAATAGTAGCAATTAGGGTGAAGTTGTGAGCACCGATCAAA

BR065153 silique cDNA library KBSP Brassica rapa subsp. pekinensis cDNA clone KBSP-046H05 5', mRNA sequence.
EX080509.1:500-519

AAAAGTTTCTCGCCGGAGAAATCAGTTCCT500GAGGTTTCTAAATAGTAGCAATTAGGGTGAAGTTGTGAGCACCGATCAAA

BR065964 silique cDNA library KBSP Brassica rapa subsp. pekinensis cDNA clone KBSP-060G08 5', mRNA sequence.
EX081320.1:436-455

AAAAGTTTCTCGCCGGAGAAATCAGTTCCT436GAGGTTTCTAAATAGTAGCAATTAGGGTGAAGTTGTGAGCACCGATCAAA

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH039L17, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces.
AC241126.1:13661-13680

AAAAGTTTCTCGCCGGAGAAATCAGTTCCT13661GAGGTTTCTAAATAGTAGCAATTAGGGTGAAGTTGTGAGCACCGATCAAA

Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:7178716-7178735

AACAGTTTCTCGCCGGAGAAATCAGTTCCT7178716GAGGTTTCTAAATAGTAGCAATTAGGGTGAAGTTGTGAGCACCGATCAAA

Barbarea vulgaris genome assembly, chromosome: 4.
OY763890.1:8820691-8820710

AAGCGTTTCTCGCCGGAAAAATCAATCCCT8820691GAGGTTTCTAAATAGTAGCAATTTGGGTGAAGTTGTGAGCAGCGATCAAA

Cardamine chenopodiifolia genome assembly, chromosome: 7.
OZ000465.1:7725020-7725039

AACCGTTTCTCGCCGGAAAAATCAGTCCCT7725020GAGGTTTCTAAATAGTAGCAATTTGGGTGAAGGTGTGAGCAGCGATCAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
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BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.346 | 0.338 | search_plus_done; http://172.18.8.135:50400/match?q=TGCTACTATTTAGAAACCTC&k=0&no_gap=0&offset=0&limit=50
0.733 | 0.387 | search_minus_done; http://172.18.8.135:50400/match?q=GAGGTTTCTAAATAGTAGCA&k=0&no_gap=0&offset=0&limit=37
0.739 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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