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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 19:17:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RR3CX81JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EX769690.1:15-36
TACTCTTTTAGACT15TGCTCCACTTGAGGAAAATCTGATAAGACAAACCACCAAACACCATCGAAAC
RS3CZ13JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EY942186.1:192-213
TTTGCTTCTTCTTCTCTACTCTTTTAGACT192TGCTCCACTTGAGGAAAATCTGATAAGACAAACCACCAAACACCATCGAAAC
RS2F586JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD573858.1:191-212
TTTGCTTCTTCTTCTCTACTCTTTTAGACT191TGCTCCACTTGAGGAAAATCTGATAAGACAAACCACCAAACACCATCGAAAC
RS1FW31JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
FD934418.1:243-264
TTTGCTTCTTCTTCTCCACTCTTTTAGACT243TGCTCCACTTGAGGAAAATCTGATAAGACAAACCACCAAACACCATCGAAAC
TSA: Raphanus sativus var. sativus RNA, contig: WG3_6326.
FX662810.1:70-91
TTTGCTTCTTCTTCTCTACTCTTTTAGACT70TGCTCCACTTGAGGAAAATCTGATAAGACAAACCACCAAACACCATCGAAAC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_20280.
FX744597.1:140-161
TTTGCTTCTTCTTCTCTACTCTTTTAGACT140TGCTCCACTTGAGGAAAATCTGATAAGACAAACCACCAAACACCATCGAAAC
TSA: Raphanus sativus RS26662 mRNA sequence.
JT811209.1:17-38
TCTACTCTTTTAGACT17TGCTCCACTTGAGGAAAATCTGATAAGACAAACCACCAAACACCATCGAAAC
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:16304442-16304463
TTTGCTTCTTCTTCTCTACTCTTTTAGACT16304442TGCTCCACTTGAGGAAAATCTGATAAGACAAACCACCAAACACCATCGAAAC
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:16304442-16304463
TTTGCTTCTTCTTCTCTACTCTTTTAGACT16304442TGCTCCACTTGAGGAAAATCTGATAAGACAAACCACCAAACACCATCGAAAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGCTCCACTTGAGGAAAATCTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGCTCCACTTGAGGAAAATCTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.558 | 0.549 | search_plus_done; http://172.18.8.135:50400/match?q=TGCTCCACTTGAGGAAAATCTG&k=0&no_gap=0&offset=0&limit=50
0.688 | 0.130 | search_minus_done; http://172.18.8.135:50400/match?q=CAGATTTTCCTCAAGTGGAGCA&k=0&no_gap=0&offset=0&limit=41
0.688 | 0.000 | cgi_end;

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