GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 05:13:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Silurus aristotelis genome assembly, chromosome: 22.
OX327774.1:8083362-8083380
TGCCCTGACAAACCTAGGCTGTCTGTATCT8083362TGCTCGTTCTTGACAACACATAAAAACACAAAATTGAGTGCAATAATGA
Brassica rapa genome, scaffold: A09.
LR031568.1:38069592-38069610
GCCACAAAATCTGAAGGGACCGGAAAAACA38069592TGCTCGTTCTTGACAACACCAAGGTAGCCAAGAGAGCCGAACATACGGT
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:48520896-48520914
GCCACAAAATCTGAAGGGACCGGAAAAACA48520896TGCTCGTTCTTGACAACACCAAGGTAGCCAAGAGAGCCGAACATACGGT
Sambucus nigra genome assembly, chromosome: 11.
OX422217.1:172419442-172419460
ACTCAGAATCGTCTACTTCTTCCCCCAAAA172419442TGCTCGTTCTTGACAACACTGTTGGGCTCCATATCATAAAAGGGATACC
BOHGQ90TF BOHG Brassica oleracea genomic clone BOHGQ90, genomic survey sequence.
BH466113.1:497-515
ACCGTATGTTCGGCTCTCTTAGCTACCTTG497GTGTTGTCAAGAACGAGCATGTTTTGCCGGTCCCTTCAGATTTTGTGGC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB063M04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC189421.1:80039-80057
ACCGTATGTTCGGCTCTCTTGGCTACCTTG80039GTGTTGTCAAGAACGAGCATGTTTTTCCGGTCCCTTCAGATTTTGTGGC
Brassica rapa cultivar BARI-6 SNP marker sequence.
EF488953.1:1180-1198
ACCATATGTCCGGCTCTCTTGGCTACCTTG1180GTGTTGTCAAGAACGAGCATGTTTTGCCGGTCCATTCAGATTTTGTGGC
Brassica rapa cultivar SPAN SNP marker sequence.
EF488954.1:1168-1186
ACCGTATGTCCGGTTCTCTTGGCTACCTTG1168GTGTTGTCAAGAACGAGCATGTTTTTCCGGTCCATTCAGATTTTGTGGC
Brassica napus SRAP marker 722CB247 genomic sequence.
EF608926.1:1176-1194
ACCGTATGTCCGGTTCTCTTGGCTACCTTG1176GTGTTGTCAAGAACGAGCATGTTTTTCCGGTCCATTCAGATTTTGTGGC
Brassica napus SRAP marker 722CG247 genomic sequence.
EF608927.1:1176-1194
ACCATATGTCCGGCTCTCTTGGCTACCTTG1176GTGTTGTCAAGAACGAGCATGTTTTGCCGGTCCATTCAGATTTTGTGGC
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:24595627-24595645
ACCGTATGTTCGGTTCTCTTGGCTACCTTG24595627GTGTTGTCAAGAACGAGCATGTTTTGCCGGTCCCTTCAGATTTTGTGGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGCTCGTTCTTGACAACAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGCTCGTTCTTGACAACAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.122 | 0.113 | search_plus_done; http://172.18.8.135:50400/match?q=TGCTCGTTCTTGACAACAC&k=0&no_gap=0&offset=0&limit=50
0.168 | 0.046 | search_minus_done; http://172.18.8.135:50400/match?q=GTGTTGTCAAGAACGAGCA&k=0&no_gap=0&offset=0&limit=46
0.173 | 0.005 | cgi_end;

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