GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:21:10, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 3701 from patent US 9551006.
KH516271.1:1262-1287
GACTGTTGGAATTGCCATTGTTAGTTGGAT1262TGCTCTACCATCTTCCTTCACCATCTTCAATTTTGGGACTCAGAAAGTTGTTAAGA
Sequence 3701 from patent US 10457952.
MO459447.1:1262-1287
GACTGTTGGAATTGCCATTGTTAGTTGGAT1262TGCTCTACCATCTTCCTTCACCATCTTCAATTTTGGGACTCAGAAAGTTGTTAAGA
m.07.E14.5 MPer183 cassava lambda zap Manihot esculenta cDNA 5', mRNA sequence.
CK652175.1:53-78
GACTGTTGGAATTGCCATTGTTAGTTGGAT53TGCTCTACCATCTTCCTTCACCATCTTCAATTTTGGGACTCAGAAAGTTGTTAAGA
m.09.C6.5 MPer183 cassava lambda zap Manihot esculenta cDNA 5', mRNA sequence.
CK652538.1:59-84
GACTGTTGGAATTGCCATTGTTAGTTGGAT59TGCTCTACCATCTTCCTTCACCATCTTCAATTTTGGGACTCAGAAAGTTGTTAAGA
m.09.L7.5 MPer183 cassava lambda zap Manihot esculenta cDNA 5', mRNA sequence.
CK652645.1:59-84
GACTGTTGGAATTGCCATTGTTAGTTGGAT59TGCTCTACCATCTTCCTTCACCATCTTCAATTTTGGGACTCAGAAAGTTGTTAAGA
43 Cassava root cDNA library Manihot esculenta cDNA 5' similar to vacuolar proton inorganic pyrophosphatase (H+ PPase), mRNA sequence.
DN740360.1:232-257
GACTGTTGGAATTGCCATTGTTAGTTGGAT232TGCTCTACCATCTTCCTTCACCATCTTCAATTTTGGGACTCAGAAAGTTGTTAAGA
TSA: Hevea brasiliensis Unigene1716_HB.Hebrbark mRNA sequence.
JR346000.1:378-403
TCTTAACAACTTTCTGAGTCCCGAAATTGA378AGATGGTGAAGGAAGATGGTAGAGCAATCCAACTAACAATGGCAATTCCAACAGTC
TSA: Hevea brasiliensis contig02269, mRNA sequence.
JT919673.1:1324-1349
TCTTAACAACTTTCTGAGTCCCGAAATTGA1324AGATGGTGAAGGAAGATGGTAGAGCAATCCAACTAACAATGGCAATTCCAACAGTC
TSA: Hevea brasiliensis contig32202, mRNA sequence.
JT923055.1:1324-1349
TCTTAACAACTTTCTGAGTCCCGAAATTGA1324AGATGGTGAAGGAAGATGGTAGAGCAATCCAACTAACAATGGCAATTCCAACAGTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/TGCTCTACCATCTTCCTTCACCATCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : TGCTCTACCATCTTCCTTCACCATCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.427 | 0.419 | search_plus_done; http://172.18.8.135:50400/match?q=TGCTCTACCATCTTCCTTCACCATCT&k=0&no_gap=0&offset=0&limit=50
0.494 | 0.067 | search_minus_done; http://172.18.8.135:50400/match?q=AGATGGTGAAGGAAGATGGTAGAGCA&k=0&no_gap=0&offset=0&limit=44
0.496 | 0.002 | cgi_end;

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