GGGenome | Results

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2025-04-09 05:26:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Quercus robur genome assembly, chromosome: 10.
OW028774.1:41120185-41120205

TGATTGATCAAGATTTTTTGTTGCATTAAA41120185TGCTGAAAATTACAAGCCAAAATGATTTTTTCTGAAAATATTTTTCACTGA

Thumatha senex genome assembly, chromosome: 22.
OX419746.1:3624809-3624829

GTCAGGTCAGACGTCAGTAGCACCCAACAA3624809TGCTGAAAATTACAAGCCAAAGAATAGTTGCTTTTATCAGCCAGAAATCCA

Quercus dentata isolate Qdleaves-2020 chromosome 10.
CP116453.1:17718501-17718521

TCAGTGAAAAATATTTTTAGAAAAAATCAT17718501TTTGGCTTGTAATTTTCAGCATTTAATGCAACAAAAAATCTTGATTAATCA

Quercus dentata isolate Qdleaves-2020 chromosome 10.
CP116453.1:18135853-18135873

TCGGTGAAAAATATTTTCAGAAAAAATCAT18135853TTTGGCTTGTAATTTTCAGCATTTAATGCAACAAAAAAATCTTGATCAATC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.098 | 0.089 | search_plus_done; http://172.18.8.135:50400/match?q=TGCTGAAAATTACAAGCCAAA&k=0&no_gap=0&offset=0&limit=50
0.124 | 0.026 | search_minus_done; http://172.18.8.135:50400/match?q=TTTGGCTTGTAATTTTCAGCA&k=0&no_gap=0&offset=0&limit=48
0.125 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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