GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:47:23, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Lotus japonicus cDNA clone:MWL018h10_r, 5' end.
AV407188.1:82-100
AGTTTGACAAGATGGGAGGTGGATTTAGGG82TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGAC
Lotus japonicus cDNA clone:MWL024f10_r, 5' end.
AV407515.1:88-106
AGTTTGACAAGATGGGAGGTGGATTTAGGG88TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGAC
Lotus japonicus cDNA clone:MWL034g01_r, 5' end.
AV408001.1:117-135
AGTTTGACAAGATGGGAGGTGGATTTAGGG117TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGAC
Lotus japonicus cDNA clone:MWL039h04_r, 5' end.
AV408338.1:71-89
AGTTTGACAAGATGGGAGGTGGATTTAGGG71TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGAC
Lotus japonicus cDNA clone:MWL049g04_r, 5' end.
AV408959.1:85-103
AGTTTGACAAGATGGGAGGTGGATTTAGGG85TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGAC
Lotus japonicus cDNA clone:MWL061c02_r, 5' end.
AV409725.1:83-101
AGTTTGACAAGATGGGAGGTGGATTTAGGG83TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGAC
Lotus japonicus cDNA clone:MWL064f06_r, 5' end.
AV409893.1:70-88
AGTTTGACAAGATGGGAGGTGGATTTAGGG70TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGAC
Lotus japonicus cDNA clone:MWM221a10_r, 5' end.
AV412611.1:228-246
AGTTTGACAAGATGGGAGGTGGATTTAGGG228TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGAC
Lotus japonicus cDNA clone:MWM145c06_r, 5' end.
AV417536.1:150-168
AGTTTGACAAGATGGGAGGTGGATTTAGGG150TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGAC
Lotus japonicus cDNA clone:MWM182e11_r, 5' end.
AV420516.1:76-94
AGTTTGACAAGATGGGAGGTGGATTTAGGG76TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGAC
Lotus japonicus cDNA clone:MWM191h09_r, 5' end.
AV421215.1:83-101
AGTTTGACAAGATGGGAGGTGGATTTAGGG83TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGAC
Lotus japonicus cDNA clone:MWM045g05_r, 5' end.
AV424804.1:74-92
AGTTTGACAAGATGGGAGGTGGATTTAGGG74TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGAC
Lotus japonicus cDNA, clone:MFB043d09_f, 3' end.
BP037138.1:48-66
TAGTTGACAAGATGGGAGGTGGATTTAGGG48TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGAC
Lotus japonicus cDNA, clone: LjCa-004-DB01, 5' end, suspension-cultured cells.
BW595474.1:121-139
AGTTTGACAAGATGGGAGGTGGATTTAGGG121TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGAC
Lotus japonicus cDNA, clone: LjFL2-002-CA12, 5' end, suspension-cultured cells treated with salicylic acid or methyljasmonate.
BW621858.1:97-115
AGTTTGACAAGATGGGAGGTGGATTTAGGG97TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGAC
Lotus japonicus cDNA, clone: LjFL2-010-DE01, 5' end, suspension-cultured cells treated with salicylic acid or methyljasmonate.
BW624916.1:148-166
AGTTTGACAAGATGGGAGGTGGATTTAGGG148TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGAC
Lotus japonicus cDNA, clone: LjFL2-029-AH02, 5' end, suspension-cultured cells treated with salicylic acid or methyljasmonate.
BW631612.1:108-126
AGTTTGACAAGATGGGAGGTGGATTTAGGG108TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGAC
LjNEST68f11r Lotus japonicus nodule library 5 and 7 week-old Lotus japonicus cDNA 5', mRNA sequence.
CB826948.1:3-21
GG3TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGAC
LjNEST78b4r Lotus japonicus nodule library 5 and 7 week-old Lotus japonicus cDNA 5', mRNA sequence.
CB827733.1:71-89
AGTTTGACAAGATGGGAGGTGGATTTAGGG71TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGAC
LjNEST80d10r Lotus japonicus nodule library 5 and 7 week-old Lotus japonicus cDNA 5', mRNA sequence.
CB827889.1:89-107
AGTTTGACAAGATGGGAGGTGGATTTAGGG89TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGAC
LjPEST7d01 Lotus japonicus seed and seed pod library Lotus japonicus cDNA 5', mRNA sequence.
CN825499.1:85-103
AGTTTGACAAGATGGGAGGTGGATTTAGGG85TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGAC
Lotus japonicus cDNA, clone: LjFL2-038-DB03, 5'-end sequence, suspension-cultured cells treated with salicylic acid or methyljasmonate.
FS317406.1:65-83
AGTTTGACAAGATGGGAGGTGGATTTAGGG65TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGAC
Lotus japonicus cDNA, clone: LjFL3-004-BH05, 5'-end sequence.
FS319423.1:334-352
AGTTTGACAAGATGGGAGGTGGATTTAGGG334TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGAC
Lotus japonicus cDNA, clone: LjFL3-036-CC12, 5'-end sequence.
FS330255.1:100-118
AGTTTGACAAGATGGGAGGTGGATTTAGGG100TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGAC
Lotus japonicus cDNA, clone: LjFL3-044-BD07, 5'-end sequence.
FS332526.1:288-306
AGTTTGACAAGATGGGAGGTGGATTTAGGG288TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCT
Lotus japonicus cDNA, clone: LjFL3-045-CB11, 5'-end sequence.
FS332865.1:147-165
AGTTTGACAAGATGGGAGGTGGATTTAGGG147TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGAC
LJGBV21TF JCVI-LJ1 Lotus japonicus cDNA 5', mRNA sequence.
GO010552.1:99-117
AGTTTGACAAGATGGGAGGTGGATTTAGGG99TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGAC
LJMC779TF JCVI-LJ2 Lotus japonicus cDNA 5', mRNA sequence.
GO024810.1:99-117
AGTTTGACAAGATGGGAGGTGGATTTAGGG99TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGAC
Lotus japonicus genomic DNA, clone: LjT31K10, TM1227.
AP010171.1:8849-8867
AGTTTGACAAGATGGGAGGTGGATTTAGGG8849TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGAC
Lotus japonicus B-129 DNA, chromosome 4, complete sequence.
AP022632.1:16341579-16341597
AGTTTGACAAGATGGGAGGTGGATTTAGGG16341579TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGAC
Lotus japonicus clone JCVI-FLLj-22F16 unknown mRNA.
BT148363.1:99-117
AGTTTGACAAGATGGGAGGTGGATTTAGGG99TGCTTCACTTGGTTAGACCGTTTCTCTCGTTTCTTCCTGAAGTTCAGAC
Trifolium repens isolate ACLI19 chromosome 08_0cc.
CP125850.1:19955521-19955539
AATCTGGTAAGATGGGAGGTGGGTTTAGAG19955521TGCTTCACTTGGTTAGACCGTTTCTATCATTCCTTCCCGAAGTTCAGAC
Trifolium repens isolate ACLI19 chromosome 08_Pall.
CP125851.1:20339255-20339273
AATCTGGTAAGATGGGAGGTGGGTTTAGAG20339255TGCTTCACTTGGTTAGACCTTTTCTATCATTCCTTCCTGAAGTTCAGAC
Trifolium fragiferum genome assembly, chromosome: 4.
OX940792.1:18480087-18480105
AATTTGGTAAGATGGGAGGTGGGTTTAGAG18480087TGCTTCACTTGGTTAGACCGTTTCTATCATTCCTTCCTGAAGTTCAGAC
Atethmia centrago genome assembly, chromosome: 1.
HG995367.1:16500515-16500533
AATACGTCGGAGATCTTGGTGTCTAGATGT16500515TGCTTCACTTGGTTAGACCATCATATAGGGCTACGTCCCCTGGGTGCTC
Mamestra brassicae genome assembly, chromosome: 1.
LR990988.1:15704537-15704555
GCCGATTGGCCTTCCTTACTTTCTAGATAT15704537TGCTTCACTTGGTTAGACCATAGAATAGGCTACGATGAGGTTCTCGTCC
Omphaloscelis lunosa genome assembly, chromosome: 2.
OU744245.1:9161400-9161418
AATGCGTCGTATATCTTGGTGTCTAGGTGT9161400TGCTTCACTTGGTTAGACCATTGTACACGGCTACGTCACCTGGGTTTCT
Fissipunctia ypsillon genome assembly, chromosome: 1.
OX387644.1:5950048-5950066
TGTGCGTCGGAGATCTCGGTATCCAGGTGT5950048TGCTTCACTTGGTTAGACCATCGTCGAGTGCCACTCCGCTGGATGTTCT
Eilema caniola genome assembly, chromosome: 26.
OX421487.1:2411918-2411936
GAGATATATGTTCTTTGAGGCGAGTGCCAA2411918TGCTTCACTTGGTTAGACCAATATATGAGAGCCCACACACCTTGTAGAG
Globia sparganii genome assembly, chromosome: 5.
OX438657.1:23903385-23903403
AATGCGTCGGAGATCTTGGTGTCTAGGTGT23903385TGCTTCACTTGGTTAGACCATACGATGGTCTTAGAAAATAAAACAATCA
Xestia ashworthii genome assembly, chromosome: 3.
OX465550.1:22565616-22565634
ATTGCACAGAAAATCTTGGTATCGAGGTGT22565616TGCTTCACTTGGTTAGACCATCAAGTAAGCATCACTTTCCTACGGTGAA
Erinaceus europaeus genome assembly, chromosome: 12.
OX485822.1:92725056-92725074
GGACATATACTGATTGTATAGAACAGGTAA92725056GGTCTAACCAAGTGAAGCAAAGTTAAAACAAGTTGATTGGATTTATTGT
Agrostemma githago genome assembly, chromosome: 6.
OY288244.1:2881213-2881231
CAACGTAAATGACGGACTTGGTAGGCTGTT2881213GGTCTAACCAAGTGAAGCATGCGGAGTCTTCAGGGTACAACGTCTCGTT
Melanchra persicariae genome assembly, chromosome: 15.
OX376658.1:7341111-7341129
CAAAGACTCAACGTATGGAGCAGATATGAT7341111GGTCTAACCAAGTGAAGCAAACATCATCATCAGACACAAACGGAGGGAG
Trididemnum clinides genome assembly, chromosome: 6.
OY776289.1:21091831-21091849
TCACAGGAGCGTCTGCGTGAGCAGTTGCAC21091831GGTCTAACCAAGTGAAGCACGGGATGGGGGCGTCGCCGTTACATGCTTT
Eutolmus rufibarbis genome assembly, chromosome: 2.
OY987205.1:37429667-37429685
GGCAATTAATTTAAATTTCTACATATCTGT37429667GGTCTAACCAAGTGAAGCAAATTACCTAAAAACCGAAGCGCATGGATTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGCTTCACTTGGTTAGACC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGCTTCACTTGGTTAGACC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.127 | 1.119 | search_plus_done; http://172.18.8.135:50400/match?q=TGCTTCACTTGGTTAGACC&k=0&no_gap=0&offset=0&limit=50
1.239 | 0.111 | search_minus_done; http://172.18.8.135:50400/match?q=GGTCTAACCAAGTGAAGCA&k=0&no_gap=0&offset=0&limit=9
1.242 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).