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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:09:20, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_49994.
FX765163.1:267-286
GTCTTCTATCCTCAGACGCAATCCGTGTGG267TGCTTCTGGGTCCTCAACAGCCATCCCTCTCTTTTTAAGTTCTGCTGGTA
BOT01-65J9TR BOT01 Brassica oleracea genomic clone BOT01-65J9, genomic survey sequence.
FI716163.1:112-131
GTCTTCTATCCTCAGACGTAATCCGTGTGG112TGCTTCTGGGTCCTCAACAGCCATCCCTCTGCAGTTGAAAAGCCATTAAA
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:20763275-20763294
GTCTTCTATCCTCATACGTAATCCGTGTGG20763275TGCTTCTGGGTCCTCAACAGCCATCCCTCTGCAGTTGAAAAGCCATTAAA
E3786 Chinese cabbage etiolated seedling library Brassica rapa subsp. pekinensis cDNA clone E3786, mRNA sequence.
BQ791999.1:210-229
TACCAGCAGAACTTAAAAAGAGAGGGATGG210CTGTTGAGGACCCAGAAGCACCACACGGATTGCGTCTGAGGATAGAAGAC
71ETGS12_UP_016_C08_12MAY2005_060 71ETGS12 Brassica napus cDNA 5', mRNA sequence.
EE442949.1:364-383
TACCAGCAGAACTTAAAAAGAGAGGGATGG364CTGTTGAGGACCCAGAAGCACCACACGGATTGCGTCTGAGGATAGAAGAC
73ETGS36_UP_007_C11_20MAY2005_091 73ETGS36 Brassica napus cDNA 5', mRNA sequence.
EE445232.1:263-282
TACCAGCAGAACTTAAAAAGAGAGGGATGG263CTGTTGAGGACCCAGAAGCACCACACGGATTGCGTCTGAGGATAGAAGAC
BNARO5GH_T3_027_C12_01DEC2006_092 Brassica napus BNARO5GH Brassica napus cDNA 5', mRNA sequence.
ES908135.1:118-137
TACCAGCAGAACTTAAAAAGAGAGGGATGG118CTGTTGAGGACCCAGAAGCACCACACGGATTACGTATGAGGATAGAAGAC
BNSCS2CT_UP_222_D11_28APR2007_089 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV032004.1:596-615
TACCAGCAGAACTTAAAAAGAGAGGGATGG596CTGTTGAGGACCCAGAAGCACCACACGGATTGCGTCTGAGGATAGAAGAC
0108501 Brassica napus Damaged cotyledons Brassica napus cDNA, mRNA sequence.
EV226575.1:345-364
TACCAGCAGAACTTAAAAAGAGAGGGATGG345CTGTTGAGGACCCAGAAGCACCACACGGATTACGTATGAGGATAGAAGAC
BR048451 etiolated mature leaf cDNA library KBLW Brassica rapa subsp. pekinensis cDNA clone KBLW-38C03 5', mRNA sequence.
EX063807.1:197-216
TACCAGCAGAACTTAAAAAGAGAGGGATGG197CTGTTGAGGACCCAGAAGCACCACACGGATTGCGTCTGAGGATAGAAGAC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_4880.
FX692708.1:1907-1926
TACCAGCAGAACTTAAAAAGAGAGGGATGG1907CTGTTGAGGACCCAGAAGCACCACACGGATTGCGTCTGAGGATAGAAGAC
Brassica napus lipoxygenase 1 mRNA, complete cds.
AY162142.1:1829-1848
TACCAGCAGAACTTAAAAAGAGAGGGATGG1829CTGTTGAGGACCCAGAAGCACCACACGGATTACGTCTGAGGATAGAAGAC
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:31581538-31581557
CTGTTGATTTTTTCAACTGCAGAGGGATGG31581538CTGTTGAGGACCCAGAAGCACCACACGGATTGCGTCTGAGGATAGAAGAC
Brassica juncea cultivar Dibya lipoxygenase 1-like gene, partial sequence.
GU085237.1:654-673
TACCAGCAGAACTTAAAAAGAGAGGGATGG654CTGTTGAGGACCCAGAAGCACCACACGGATTGCGTCTGAGGATAGAAGAC
Brassica napus genome assembly, chromosome: A01.
HG994355.1:18305326-18305345
CTGTTGATTTTTTCAACTGCAGAGGGATGG18305326CTGTTGAGGACCCAGAAGCACCACACGGATTGCGTCTGAGGATAGAAGAC
Brassica napus genome assembly, chromosome: C01.
HG994365.1:29774385-29774404
TTTAATGGCTTTTCAACTGCAGAGGGATGG29774385CTGTTGAGGACCCAGAAGCACCACACGGATTACGTCTGAGGATAGAAGAC
Brassica rapa genome, scaffold: A01.
LR031571.1:23550590-23550609
CTGTTGATTTTTTCAACTGCAGAGGGATGG23550590CTGTTGAGGACCCAGAAGCACCACACGGATTGCGTCTGAGGATAGAAGAC
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:29408440-29408459
TTTAATGGCTTTTCAACTGCAGAGGGATGG29408440CTGTTGAGGACCCAGAAGCACCACACGGATTACGTCTGAGGATAGAAGAC
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:24078278-24078297
CTGTTGATTTTTTCAACTGCAGAGGGATGG24078278CTGTTGAGGACCCAGAAGCACCACACGGATTGCGTCTGAGGATAGAAGAC
Arabis alpina genome assembly, chromosome: 2.
LT669789.1:8149918-8149937
AAGTTTCATTTCTTAATTGCAGAGGGATGG8149918CTGTTGAGGACCCAGAAGCACCACACGGCTTACGTCTGAGGATAAAAGAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TGCTTCTGGGTCCTCAACAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TGCTTCTGGGTCCTCAACAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.198 | 0.189 | search_plus_done; http://172.18.8.135:50400/match?q=TGCTTCTGGGTCCTCAACAG&k=0&no_gap=0&offset=0&limit=50
0.782 | 0.584 | search_minus_done; http://172.18.8.135:50400/match?q=CTGTTGAGGACCCAGAAGCA&k=0&no_gap=0&offset=0&limit=47
0.793 | 0.011 | cgi_end;

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